Query= MSMg01no495_k20.b1 MSMg01no495_k20.b1 CHROMAT_FILE:
MSMg01no495_k20.b1 PHD_FILE: MSMg01no495_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:47 2005
(657 letters)
>mm_chr16_40824691_40825747
Length = 1057
Score = 1222 bits (632), Expect = 0.0
Identities = 650/656 (99%)
Strand = Plus / Plus
Query: 1 tagatgatctgaggtcacattttacacagagatcaagtaccttcatgtgtccctcatgaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tagatgatctgaggtcacattttacacagagatcaagtaccttcatgtgttcctcatgaa 260
Query: 61 ggacttatgaaataaggcgcttatgaaatagagactacatctgaagattcctgggagtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacttatgaaataaggcgcttatgaaatagagactacatctgaagattcctgggagtct 320
Query: 121 atgatacttaagatggctgtttgggttgggtgtggaaccactgattatattaattctgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatacttaagatggctgtttgggttgggtgtggaaccactgattatattaattctgac 380
Query: 181 tctgattctcaatagttggtatatttttgaagaggctgatgaaatacattgggcccctcc 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgattctcaatagttggtatgtttttgaagaggctgatgaaatacattgggcccctcc 440
Query: 241 tttatatctgtgcaatgtataaagcaattccttctgggtggagtggttgaaaacctatgg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tttacatctgtgcaatgtataaagcaattccttctgggtggagtggttgaaaagctatgt 500
Query: 301 gataatacagccgaacacagtggctggcacattgttcttgctcagtaagtggcagctgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gataatacagccgaacacagtggctggcacattgttcttgctcagtaagtggcagctgta 560
Query: 361 ttagccttcggttatttattaggcaacctgtggggataaaatggttcctgtacaaaaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagccttcggttatttattaggcaacctgtggggataaaatggttcctgtacaaaaata 620
Query: 421 acatgtcaggatatgtatttgttgtcaatttgtcttagagcattgcatgaggaattatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatgtcaggatatgtatttgttgtcaatttgtcttagagcattgcatgaggaattatca 680
Query: 481 gaggatagaacacatactacctggtcaccattgtgtaccgatggcaggcatttttaatca 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggatagaacacatactaccttgtcaccattgtgtaccgatggcaggcatttttaatca 740
Query: 541 atcacactgagaccaggcagagcctcataatctttctaaaaacagtgttccaggcagcta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcacactgagaccaggcagagcctcataatctttctaaaaacagtgttccaggcagcta 800
Query: 601 ctactaatcaatttctattgacatgaaagatgaatcctatttgccatctaatagct 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctactaatcaatttctattgacatgaaagatgaatcctatttgccatctaatagct 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_k20.g1 MSMg01no495_k20.g1 CHROMAT_FILE:
MSMg01no495_k20.g1 PHD_FILE: MSMg01no495_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:47 2005
(585 letters)
>mm_chr16_41035880_41036863
Length = 984
Score = 820 bits (424), Expect = 0.0
Identities = 454/464 (97%), Gaps = 3/464 (0%)
Strand = Plus / Minus
Query: 1 cagagagaatttgttgtctgttcttagagagtattcttcctgttctagcccctgcactgt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 462 cagagagaatttgttgtctgttcttagagagtattcttcctgttccagcccctgcactgt 403
Query: 61 ggcagtgactttaggacagcattgctcatgttctaatttaggaccagcattgttgtatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggcagtgactttaggacagcattgctcatgttctaatttaggaccagcattgttgtatat 343
Query: 121 atctgatctctgacccttgtttggccatggttacaaccaaatagccaggggctgatgtaa 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atttgatctctgacccttgtttggccatggttacaaccaaatagccaggggctgatgtaa 283
Query: 181 tcatattggccaccaacaagatctaattcaagatactctttatacttagaatttttgaaa 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 282 tcatattggccaccaacaagatctaattcaagacactctttatacttagaatttttgaaa 223
Query: 241 aaaataattataaaatcatactttttcatcctttcttattgtagagagattcttttctca 300
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aaaataattat-aaattatactttttcatcctttcttattgtagagagattcttttctca 164
Query: 301 tataatatattctgatgatagtttcccctcttcctacccctgcaaggtcttccccacatc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 163 tataatatattctgatgatagtttcccctcttcctacccctgcaaggtcttccccaca-c 105
Query: 361 ccc-tcccgttctgtttctcattagaaaagaacaagcttctaagagacaaaaaccaaaca 419
||| ||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 104 cccttcccgttctctttctcattagaaaagaacaagcttctaagagatagaaaccaaaca 45
Query: 420 tggaaaaataaaatataatgagatgaagcaaaaactatcatata 463
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 tggaaaaataaaatataatgagatgaagcaaaaactatcatata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space: 560050
Effective search space used: 560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
