BAC Information

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BAC

Clone NameMSMg01-496O16
Chromosome16 (Build37)
Map Location 43,658,778 - 43,658,950
singlet/doubletsinglet
Overlap geneLOC100043314
Upstream geneBC002163, LOC667484, Zbtb20
Downstream geneDrd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496O16.T7 (MSMg01no496_o16.b1)MSMg01-496O16.TJ (MSMg01no496_o16.g1)
ACCAG573609AG573610
length684778
length of high quality
(start - end)
171 (75 - 245)546 (69 - 614)
definitionCHROMAT_FILE: MSMg01no496_o16.b1 PHD_FILE: MSMg01no496_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:25 2005CHROMAT_FILE: MSMg01no496_o16.g1 PHD_FILE: MSMg01no496_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATAATTTGCGGTTGCTAAACGACTCACTGGTCGGTACTTGGCGCGGA
ATTCTCTAATGCTTTAAATAGCGAATTGAACTGGATGAGCTGGGCTTAAA
GGGCCGAGGAAACCAGACCAAAAAGAATTGAGAATATTTTAGCTCATCAC
AGACAGTAGTTACAAGACAGCAAGAATTCCTGAGAAAGCTTGACAGCCAT
GTATCACAACTTTGGAATAGGACAGAACTGTAACCTCACTTCTTACATTC
AAAACAATGGAAGACCCTTGAAAAAGGTTGAAAGTAAGGGGACCTTTAAA
AACCCTGGGAGACCCGGGGGCCCCCTTTTTTTTTTTTTTTTTTTTTAAAA
AAACGGGGGCCCCCCTCCCTCCCCCCCTCCAAAAATTAAGTTGGTTTTTT
TTTTTTCTCCCCACCCTTTTTTTTTTGTTGGGTGGGGNGGAGAGGCGCGT
TACCCCTCTTCCTCTCTTCTTCTCTCTCTTTTTAAACACCTTGTCCCCCT
TCTACCCTTTCCCCCCCCCCCCTTTTTTATGTTTTCTCTTTGTTTGCTTT
ATTTTTATACCAACNTNTTATTCCCCCCCCCCAACACATTAGTGAGTGTT
TGCGTTCTCTTCCCCTCTATTAAATAACTTGTATTTTTTTTTTTTGGCCG
TGCGCCCAGCATTATCGGTTACTCATGTCCCCCC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCTGCAAAATTCTACTCTAAAACCATCCAGCTCTGAGGTT
TTTTGGTCAGGTGATGTTTAACAACTACTTCTATTTCTATTTCCTTAGGA
GTTGTAGGTCTATTGAATTTGTTTATCTGATCTTGATTTAACTTTGGTAG
GTGGTATATATCAAGAAAACCATTCATTTTGTTTAGACTTTCCAATTTTG
TGGAGTACAAGTTTTTTGAAGTAAGACCTAATGATTCTTTGGATTTCCTC
AGAGTCTACTGTTATATTTTTCTTTTAATTTCTGGGTTTTTTTTTTTGTT
TGTTTTTGGTTTTTGTTGTTGTTGTTAATTTGGTTATTCTCTCCTCTGAC
CTTTAGTTACCCCCCCCAANGGTTTGTTTATCTTGTTGATTTTCTCAAAG
AACCAGCGTTTGGTTCATTCTTTGTATTGTTCTCTTTCTTTCTAATTTAT
TAATTTCATCCCTGAGTTTGGTTATTTCCTGCCATCTACTGCTCTTGGGT
GTGTTTGTTTCTTTTTCTTTTACAGCTTCCAGGTGTGCTGTTAAGTAGCT
AGTATGAGATTTCGCTAATTTCTTTTTGAAGACACTTAGTGTCTTCCTCT
TACTTTGTTTTTATTGTGTCCCATAAGTTTGGGTATGTTGTGCACTTATT
ATCATTGAATTCTCGAAAGTCTTTACTTCTTTTATTTTCCCTTGAAAAAT
GGGTTTTTATATACACTTGTCCCGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_o16.b1 MSMg01no496_o16.b1 CHROMAT_FILE:
MSMg01no496_o16.b1 PHD_FILE: MSMg01no496_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:25 2005
         (171 letters)



>mm_chr16_43658578_43659150
          Length = 573

 Score =  319 bits (165), Expect = 5e-92
 Identities = 171/173 (98%), Gaps = 2/173 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaactggatgagctgggcttaaagggccgaggaaaccagaccaaaaagaattgagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaactggatgagctgggcttaaagggccgaggaaaccagaccaaaaagaattgagaa 260

                                                                       
Query: 61  tattttagctcatcacagacagtagttacaagacagcaagaattcctgagaaagcttgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttagctcatcacagacagtagttacaagacagcaagaattcctgagaaagcttgac 320

                                                                
Query: 121 agccatgtatcacaactttg-ga-ataggacagaactgtaacctcacttctta 171
           |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 321 agccatgtatcacaactttgtgatataggacagaactgtaacctcacttctta 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 573
Length adjustment: 8
Effective length of query: 163
Effective length of database: 565
Effective search space:    92095
Effective search space used:    92095
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)