BAC Information

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BAC

Clone NameMSMg01-498M10
Chromosome16 (Build37)
Map Location 41,733,781 - 41,908,922
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498M10.T7 (MSMg01no498_m10.b1)MSMg01-498M10.TJ (MSMg01no498_m10.g1)
ACCAG575017AG575018
length765751
length of high quality
(start - end)		582 (52 - 633)539 (58 - 596)
definitionCHROMAT_FILE: MSMg01no498_m10.b1 PHD_FILE: MSMg01no498_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:57 2005CHROMAT_FILE: MSMg01no498_m10.g1 PHD_FILE: MSMg01no498_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,733,781 - 41,734,359)(41,908,386 - 41,908,922)
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTATTTTGCGCAAGAAGGGACGGAATGGCCACTAAGCG
TGACCACAAGAAAGCTGCCCCACTTCTTCAGGGCCACTGGGCCTGCCTAC
AGCATCCAGAGAGCTTTGTAATTTCAGTTCATGGCCAGCCTTTTTCTTCC
TCCGCCATCAACCTGCTAATGCTTTTCTAATAATTACCATTTTTTGAAAC
TATTTTGGCTGTTAAAAATGTTTCTTTTTAATAAGCTGATTAAACGAGCC
TGCTTATTAGCATAAGCCTTTTGCTGTTCAGCCCTCTCCCTAATTAAAAG
CACTCATCTGTGCAGACCTGGATTTCTCCCCTTCGGTCTGCGATAGGCTT
TTGGATAGTTTTTCCTTGCGGATTTTTTTTTCTTTTACTCTTGTTTCTTT
TGGTTGTTTGCTACTCCTGAATCCCACAGAGAGATAAACAGCTGAGCAAA
ATTAAACAGGGCAGCGTATATGGTCTACGTATCTGCATGAAAATGGTGGT
CACACAGAGTTTAAAAGGAAGGCTCTACTTTTATAAGAGTCATATAAAGC
TCCCAACATTACAAGCTATCAACAGTGATATGTGATGATAAGAAGCAAGG
AATGCCATTCCCCTGTTCTTTCCTTAGTGGTATCTTCCTAACTTCCACAG
ATGCCCTTGGGAACATCCCTACTCTGTTAGCACATTGAGTGCACTTAGTA
GGGAGTTTCTATATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCACAGTGAAATTCTTGAGGTACTTTTGCGATTAAGCTGTTGAA
ACACACTAAAGAAGTAAAACACACAAAATATAGTCTAACTCTTTTTTTAA
GATCAGATGGTAAGATAAGATGTATTTTCAGCCATTGTTAGATGCAACTT
TATTTATATGTTTTAAAATGATTGGCCCATTAATCTTGCAGATAAATTAA
CAGCTATTCGTCCATGTTTACAAAAACTAGAAAATATGAAAACAAAACAA
ATAAGTAATAGAAAAATATTAACACAACAAAAATCAGTGTTTATTGTGAA
AGACATTTATCTTTAGAATTGCTAAAATTAAAAGCTGTTGTGGTGAGACT
GGACCACCAACCAAAGAACAAGAATAAACTGGATCTACATTCTAAAACAT
CCTCCACACCCCTGTGTGCATGTATGTAGCAGATATGCAGCTTGGTCTTC
ATGTGGGTCCAAAAACAACTGGAATGGGGATTGTCTCTGACTCTCTGTCT
GACTGAGGATCCTGTTCCCATAACTGGGCTGCCTTGTCTAGCCTCAGTGG
CAGAAGATGTACCTAGTCCTACAGTGACTTGATGTGCCAGGATATGTTGG
TGTCTAAGGATGTCCTCCTTANAGAAAANAAAATGAANGAAGGGAAGGGG
CTGTAGAAAAGGGAGTATGCAAGATGGGGCCTGTTTGAAGGGTACTGTGG
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_m10.b1 MSMg01no498_m10.b1 CHROMAT_FILE:
MSMg01no498_m10.b1 PHD_FILE: MSMg01no498_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:57 2005
         (582 letters)



>mm_chr16_41733578_41734559
          Length = 982

 Score = 1089 bits (563), Expect = 0.0
 Identities = 575/579 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtattttgcgcaagaagggacggaatggccactaagcgtgaccacaagaaag 63
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtattttgggcaagaagggacagaatggccactaagcgtgaccacaagaaag 263

                                                                       
Query: 64  ctgccccacttcttcagggccactgggcctgcctacagcatccagagagctttgtaattt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgccccacttcttcagggccactgggcctgcctacagcatccagagagctttgtaattt 323

                                                                       
Query: 124 cagttcatggccagcctttttcttcctccgccatcaacctgctaatgcttttctaataat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagttcatggccagcctttttcttcctccgccatcaacctgctaatgcttttctaataat 383

                                                                       
Query: 184 taccattttttgaaactattttggctgttaaaaatgtttctttttaataagctgattaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taccattttttgaaactattttggctgttaaaaatgtttctttttaataagctgattaaa 443

                                                                       
Query: 244 cgagcctgcttattagcataagccttttgctgttcagccctctccctaattaaaagcact 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agagcctgcttattagcataagccttttgctgttcagccctctccctaattaaaagcact 503

                                                                       
Query: 304 catctgtgcagacctggatttctccccttcggtctgcgataggcttttggatagtttttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catctgtgcagacctggatttctccccttcggtctgcgataggcttttggatagtttttc 563

                                                                       
Query: 364 cttgcggatttttttttcttttactcttgtttcttttggttgtttgctactcctgaatcc 423
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttgctgatttttttttcttttactcttgtttcttttggttgtttgctactcctgaatcc 623

                                                                       
Query: 424 cacagagagataaacagctgagcaaaattaaacagggcagcgtatatggtctacgtatct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cacagagagataaacagctgagcaaaattaaacagggcagcgtatatggtctacgtatct 683

                                                                       
Query: 484 gcatgaaaatggtggtcacacagagtttaaaaggaaggctctacttttataagagtcata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcatgaaaatggtggtcacacagagtttaaaaggaaggctctacttttataagagtcata 743

                                                  
Query: 544 taaagctcccaacattacaagctatcaacagtgatatgt 582
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaagctcccaacattacaagctatcaacagtgatatgt 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no498_m10.g1 MSMg01no498_m10.g1 CHROMAT_FILE:
MSMg01no498_m10.g1 PHD_FILE: MSMg01no498_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:57 2005
         (539 letters)



>mm_chr16_41908386_41909324
          Length = 939

 Score = 1000 bits (517), Expect = 0.0
 Identities = 532/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   acagtgaaattcttgaggtacttttgcgattaagctgttgaaacacactaaagaagtaaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 acagtgaaattcttgaggtacttttgcgattaagctgttgaaacacactaaagaagtaaa 478

                                                                       
Query: 62  acacacaaaatatagtctaactctttttttaagatcagatggtaagataagatgtatttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acacacaaaatatagtctaactctttttttaagatcagatggtaagataagatgtatttt 418

                                                                       
Query: 122 cagccattgttagatgcaactttatttatatgttttaaaatgattggcccattaatcttg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cagccattgttagatgcaactttatttatatgttttaaaatgattggcccattaatcttg 358

                                                                       
Query: 182 cagataaattaacagctattcgtccatgtttacaaaaactagaaaatatgaaaacaaaac 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cagataaattaacagctattcgtccatgtttacaaaaactagaaaatatgaaaacaaaac 298

                                                                       
Query: 242 aaataagtaatagaaaaatattaacacaacaaaaatcagtgtttattgtgaaagacattt 301
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aaataagtaagagaaaaatattaacacaacaaaaatcagtgtttattgtgaaagacattt 238

                                                                       
Query: 302 atctttagaattgctaaaattaaaagctgttgtggtgagactggaccaccaaccaaagaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 atctttagaattgctaaaattaaaagctgttgtggtgagactggaccaccaaccaaagaa 178

                                                                       
Query: 362 caagaataaactggatctacattctaaaacatcctccacacccctgtgtgcatgtatgta 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 caagaataaactggatctacattctaaaacatcctccacacccctgtgtgcatgtatgta 118

                                                                       
Query: 422 gcagatatgcagcttggtcttcatgtgggtccaaaaacaactggaatggggattgtctct 481
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gcagatatgcagcttggtctgcatgtgggtccaaaaacaactggaatggggattgtctct 58

                                                                    
Query: 482 gactctctgtctgactgaggatcctgttcccataactgggctgccttgtctagcctc 538
           || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  gattctcagtctgcctgaggatcctgttcccataactgggctgccttgtctagcctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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