BAC Information

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BAC

Clone NameMSMg01-499A16
Chromosome16 (Build37)
Map Location 12,528,010 - 12,528,325
singlet/doubletsinglet
Overlap genenone
Upstream gene4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
Downstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499A16.T7 (MSMg01no499_a16.b1)MSMg01-499A16.TJ (MSMg01no499_a16.g1)
ACCAG575220AG575221
length705721
length of high quality
(start - end)
316 (320 - 635)664 (58 - 721)
definitionCHROMAT_FILE: MSMg01no499_a16.b1 PHD_FILE: MSMg01no499_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:20 2005CHROMAT_FILE: MSMg01no499_a16.g1 PHD_FILE: MSMg01no499_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCTG
TCTTTTCCTAATGTCTGCTTGTCCATCTGCCTGCACTCCACAAGCACATC
ACACACCATCCTTCTTCTTGAACTTGAGAGCAGCCTAAGCATGAGACCCA
TGAGCAGCTGAGCTTTGAATGTGACGCAATGGTTATCCTGTAAGAGTGAA
AGGAGGCAGAGAACAGAAAGGAAGAGAGAGGAGGAGGGAAGAGGTTCTCC
TGTTGTTACGGGCAGCTGTCATCTTGTACACTGAACTCCCTACTCCGTTT
TGCTGACACTGTACATCNGTGATTATCTGAGAACTGACCAGCATAAACTC
ACGTGGAGCCAGCTTCACTGTCTCCCCGGAGAGACAGTTGTGTTAAGTCA
GGCTGGCCAATTATCGAGTTCTTTCTTTTGATGATAATAATGACTGTGAA
ACTAAGTCAGACTGGCTGAATGCAGTGTGAGGAAGTTATTAGAACCCATT
TCCTAGCCATGGGCGAAATGGTTAGGTCACTAAAGCTCCTCCTGGTGTCC
ATTGTAAGGTTTCTTCATATGACCTGAACTTAGAGGAATCCTGGGATATG
AAAGTTTCAGTGTAAAACCTAAAAATTTTCCATTTGTTGCTCTCGCTAGG
CATTTTTTATTATCTTAACCCAAGATAAGGCTCCTTTTGCAAATTATATG
TTGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATACTGGGGCATATGAGATAATCTTCATTCACTTCTTCACCTG
CCATTGTGGCCAGCTCAATACCATGGATGCCTGTTGCCGGGAAATAAGTC
CACTCTCTAACCCTTTTTGTTTAGAGTCTCCAATGAGAAGCAGGGCGTAA
TTCCAGTAAGTCTACCTTTATATGGTACTTGACATTTTCCCCTTGTGCTT
TTAATATTCTTTGATTTTCCTTATGCTTAGTGTTTTGATTGTTATGTGGC
AAGGGTACTTTCTTTTCTGCTCCAATCTATTTGGTGTTCTGTGTGCTTCT
TGTACCTATATAGGCATCTCCTTCTTTAGGTTAAGAAAATTTTTTTTCTA
CACTTTGGCTGGAAATATTTTCTAGGCCTTTGAGCCAGGGTTTTTCTGCT
TCTGTTCTTACATTTTCTTACATTTCCCATTATTCTTACATTGTTCTTTT
CATGGTGTCCCAAATTTCCTGGATGTTTTGTGTTAGAAACTTTTTAGCTG
TGTTATTTTCTTTGACTGATGTTATCTATTTCATCTACAGTATCTTCAAC
ACCTGAGATTTTCTTTTTCATCTTTTATATTATGTAGGTGATACTTACGT
TTTGTAGTTCCTGTTTGATTACCTACATTTTCCTTTTCTGGAATTCCTAC
GGTTTGTAGGAATTGATATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_a16.b1 MSMg01no499_a16.b1 CHROMAT_FILE:
MSMg01no499_a16.b1 PHD_FILE: MSMg01no499_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:20 2005
         (316 letters)



>mm_chr16_12527810_12528525
          Length = 716

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%), Gaps = 2/317 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattatctgagaactgaccagcataaactcacgtggagccagcttcactgtctccccgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgattatctgagaactgaccagcataaactcacgtggagccagcttcactgtctccccgg 457

                                                                       
Query: 61  agagacagttgtgttaagtcaggctggccaattatcga-gttctttcttttgatgataat 119
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 456 agagacagttgtgttaagtcaggctggccaattatc-acgttctttcttttgatgataat 398

                                                                       
Query: 120 aatgactgtgaaactaagtcagactggctgaatgcagtgtgaggaagttattagaaccca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aatgactgtgaaactaagtcagactggctgaatgcagtgtgaggaagttattagaaccca 338

                                                                       
Query: 180 tttcctagccatgggcgaaatggttaggtcactaaagctcctcctggtgtccattgtaag 239
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tttcctagccatgggagaaatggttaggtcactaaagctcctcctggtgtccattgtaag 278

                                                                       
Query: 240 gtttcttcatatgacctgaacttagaggaatcctgggatatgaaagtttcagtgtaaaac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtttcttcatatgacctgaacttagaggaatcctgggatatgaaagtttcagtgtaaaac 218

                            
Query: 300 ctaaaaattttccattt 316
           |||||||||||||||||
Sbjct: 217 ctaaaaattttccattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)