Query= MSMg01no500_h24.b1 MSMg01no500_h24.b1 CHROMAT_FILE:
MSMg01no500_h24.b1 PHD_FILE: MSMg01no500_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:09 2005
(659 letters)
>mm_chr16_38493216_38494273
Length = 1058
Score = 1212 bits (627), Expect = 0.0
Identities = 648/655 (98%), Gaps = 1/655 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggacagttacggttataatagtgagaccttgtgctaaaaacaaaacaaaaat 64
|||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacaggcagggttacaatagtgagaccttgtgctaaaaacaaaacaaaaat 264
Query: 65 tatagaaattgatgaacaatgtcctattatttttgcaggatcactatttcatcttatatt 124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 tatagaaattgatgaacaatgtcctattatttttg-aggatcactatttcatcttatatt 323
Query: 125 aaaaaaaatctgtgtgtaagctctttgcatctccctttatgcttctcagaggctgaatgg 184
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 aaaaaaaatctgtgtgtaagctctttgcatctccttttatgcttctcagaggctgaatgg 383
Query: 185 tgtgactgagctctttgtactagagtgaggtctttgtttgcagtgttgtgggtctgtagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtgactgagctctttgtactagagtgaggtctttgtttgcagtgttgtgggtctgtagt 443
Query: 245 gaggcagaacaccactgtgagacagtgcagctctctccagggagcaggagacatctctcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaggcagaacaccactgtgagacagtgcagctctctccagggagcaggagacatctctcc 503
Query: 305 aggcaaggtccccagtgacctgcttcctctaatctgacccatttcctacttttcaccatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggcaaggtccccagtgacctgcttcctctaatctgacccatttcctacttttcaccatc 563
Query: 365 tccagcaatgccaccacagtgggactatgacaaactcctcagactcctgtggcttctcac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tccagcaatgccaccacagtgggactatgacaaactcctcagactcctgtggcttctcac 623
Query: 425 aagcctgaccgtccactggtaaccaagcctttaacataagagcctttgggagagcgttac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagcctgaccgtccactggtaaccaagcctttaacataagagcctttgggagagcgttac 683
Query: 485 atctagactatagtcatcatacaggcgaaaaacgaacgaaccaataatcaaattagatga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atctagactatagtcatcatacaggcgaaaaacgaacgaaccaataatcaaattagatga 743
Query: 545 ccaccactgctctgcctatctgtatatttgccggagcaacattcctttcctatgtccatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 744 ccaccactgctctgcctatctgtatatttgccggagcaacattcctttcctatttccatt 803
Query: 605 taaacatatcactccttggaatgccttcccacaatgctcctccctttcagttctg 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 taaacatatcactccttggaatgccttcccacaatgctcctccctttcagttctg 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space: 680152
Effective search space used: 680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_h24.g1 MSMg01no500_h24.g1 CHROMAT_FILE:
MSMg01no500_h24.g1 PHD_FILE: MSMg01no500_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:09 2005
(506 letters)
>mm_chr16_38532840_38533742
Length = 903
Score = 801 bits (414), Expect = 0.0
Identities = 437/446 (97%), Gaps = 3/446 (0%)
Strand = Plus / Minus
Query: 1 aaggacatcctcatattagtgactttgagccaagcccgggctatgaaaccctgtccggaa 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaggacatcctcatattaatgactttgagccaagcccgggctatgaaaccctgtccggaa 384
Query: 61 aagcaagacagggaaaggagagcagaaacaaagaaatgaaagagtgcattaattcagcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagcaagacagggaaaggagagcagaaacaaagaaatgaaagagtgcattaattcagcgc 324
Query: 121 acatgttgtcagcctcttctgtggagggagagagggaagtaaagagaaaagggtcaggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acatgttgtcagcctcttctgtggagggagagagggaagtaaagagaaaagggtcaggca 264
Query: 181 gaggatggacgacagctccagatgactgctgccaagtagcgataagagcttgctgtgtta 240
||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 263 gaggatg---gacaactccagatgactgctgccaagtagggataagagcttgctgtgtta 207
Query: 241 gatctgtgtcttagttagggtttcattgctgtgaagagacactatggccaaggcaactct 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 206 gatctgtgtcttagttagggtttcattgctgtgaagagacaccatggccaaggcaactct 147
Query: 301 taaaaggaaaacattgaactggggctggcttacaggttcagaggtttagcccattatcag 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 146 taaaaggaaaacattgaactggggctggcttacaggttcagaggttcagcccattgtcag 87
Query: 361 catggtgagaagcatggcagcatgcaggcagacatggtgctgaaggagccgagttctgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 catggtgagaagcatggcagcatgcaggcagacatggtgctgaaggagccgagttctgtc 27
Query: 421 ttgggggaccctttttggggactctc 446
||||||||||||||||||||||||||
Sbjct: 26 ttgggggaccctttttggggactctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 903
Length adjustment: 10
Effective length of query: 496
Effective length of database: 893
Effective search space: 442928
Effective search space used: 442928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
