BAC Information

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BAC

Clone NameMSMg01-500K07
Chromosome16 (Build37)
Map Location 80,963,831 - 80,964,169
singlet/doubletsinglet
Overlap genenone
Upstream gene1700066C05Rik, LOC621365, LOC100039724
Downstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500K07.T7 (MSMg01no500_k07.b1)MSMg01-500K07.TJ (MSMg01no500_k07.g1)
ACCAG576435AG576436
length636667
length of high quality
(start - end)
340 (297 - 636)238 (57 - 294)
definitionCHROMAT_FILE: MSMg01no500_k07.b1 PHD_FILE: MSMg01no500_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:18 2005CHROMAT_FILE: MSMg01no500_k07.g1 PHD_FILE: MSMg01no500_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACAATAGGTCANGACTCGCGCGGAATCAAGCACATTACTAACAAATTAGG
TCATTTCTTCCCTTAGCTGTAGACCTACAGTTTTGCATGGATCTCTTTGG
GTTCTCTCTTTACAATGAAAACTCATATAAAAACCTCTTAGTGCACACAT
ATTCACTTCTGACTTCATTTGATCAGATTATAATTCCACCTAAAGCACCT
CTGAAGTTAGAGTATATTCTTATTGATTTAAGAAAGCAAAAAGAAAAACA
ACAATAATACCACCACCACCACCAACAACAACATCATAAACTGGCTAGAT
CTGTTAGCAGCCTTTTGAGATTTAACTAGAAAGCCACCAAAAAGGTATCC
GTGGCTTTTGCAGAAATAATTCATTGTCATTCTCCTTTGATAAACTCATA
GAAATAATTGGATACTTATTCATTTATTTTTGAGTACCTTACTTTATTCT
AACCCTTATGTTTAAAATCTATATTTAAATGATTTTTGACTAGCGATGTG
GTGGATTCCTTTAAATCTGTTACGAGCCTGGCAGAATGAGGAGTTATTTA
TTGACCAGTTTTCATATCTCCCAAAGTGTGTGGTCCTTTTCTTTCTTATT
TAGATGTGGTACTTTCCTGTGACATACTCTTAAAGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTATA
TTATCAGGGAAATGCAAATCAAAATAACCCTGAGATTCCATCTCACACCA
GTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGG
ATGTGGAGAAAGAGGAACACTCCTCCACTGTTGGTGGAATTGCAAGCTTG
TACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTAGAAAATGGGTCAAT
GNTCTACCAGAGGATCCAGCAATACCTCTTCTGGGCATATATCCAGAAGA
TGTCCCAACCGGTATGAAGGACACATGCTCCACTATGTTCATAGCAGCCT
TATTTGCAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAG
GAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGC
TATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGG
AGGGCATCATCCTGAGCGAGGTAACCCAATCACAAAGGAACTCACACAAT
ATGTACTCACCGATAAGTGGATACTAGCCCAAAACTTAGTATACCCAAGA
TATAAGATACAATTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_k07.b1 MSMg01no500_k07.b1 CHROMAT_FILE:
MSMg01no500_k07.b1 PHD_FILE: MSMg01no500_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:18 2005
         (340 letters)



>mm_chr16_80963631_80964370
          Length = 740

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatctgttagcagccttttgagatttaactagaaagccaccaaaaaggtatccgtggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agatctgttagcagccttttgagatttaactagaaagccaccaaaaaggtatccgtggct 480

                                                                       
Query: 61  tttgcagaaataattcattgtcattctcctttgataaactcatagaaataattggatact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tttgcagaaataattcattgtcattctcctttgataaactcatagaaataattggatact 420

                                                                       
Query: 121 tattcatttatttttgagtaccttactttattctaacccttatgtttaaaatctatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tattcatttatttttgagtaccttactttattctaacccttatgtttaaaatctatattt 360

                                                                       
Query: 181 aaatgatttttgactagcgatgtggtggattcctttaaatctgttacgagcctggcagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaatgatttttgactagcgatgtggtggattcctttaaatctgttacgagcctggcagaa 300

                                                                       
Query: 241 tgaggagttatttattgaccagttttcatatctcccaaagtgtgtggtccttttctttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgaggagttatttattgaccagttttcatatctcccaaagtgtgtggtccttttctttct 240

                                                  
Query: 301 tatttagatgtggtactttcctgtgacatactcttaaag 339
           ||||||||||||||||||||| |||||||||||||||||
Sbjct: 239 tatttagatgtggtactttcccgtgacatactcttaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)