Query= MSMg01no501_k01.b1 MSMg01no501_k01.b1 CHROMAT_FILE:
MSMg01no501_k01.b1 PHD_FILE: MSMg01no501_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:29 2005
(669 letters)
>mm_chr16_39549112_39550180
Length = 1069
Score = 1261 bits (652), Expect = 0.0
Identities = 664/668 (99%), Gaps = 4/668 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctttagt-ttcgcctgatccataaccataatgaacttctgtgtaaatatttca 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctttagtctt-gcctgatccataaccataatgaacttctgtgtaaatatttca 262
Query: 63 tcaaaatgatcttaactaattctgagatgattaataatataagatgtgctcagtctatag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcaaaatgatcttaactaattctgagatgattaataatataagatgtgctcagtctatag 322
Query: 123 tgtattagatgtattctgagaaaagggaacataaaagtaggaatgatagatatgaataat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtattagatgtattctgagaaaagggaacataaaagtaggaatgatagatatgaataat 382
Query: 183 aaaataggaactagggataataaatagtgtaaaagaatactaaacataaaatatactgcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaataggaactagggataataaatagtgtaaaagaatactaaacataaaatatactgcc 442
Query: 243 ataaaataggaattttttgttaaaaggccagtatgaatgaaaaaggaaaacttaatgaag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ataaaataggaattttttgttaaaaggccagtatgaatgaaaaaggaaaacttaatgaag 502
Query: 303 taatcaaagttttaaattgaaaatgagtatttgaaagatataaggaaatgtaacagatca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taatcaaagttttaaattgaaaatgagtatttgaaagatataaggaaatgtaacagatca 562
Query: 363 agtgtgagctgagagtacataaaaatattgaagaaaaatgtaaattgattgttaaaatga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtgtgagctgagagtacataaaaatattgaagaaaaatgtaaattgattgttaaaatga 622
Query: 423 acatcttattgaaagtaagtaaatgatactgaaaatatggtaacaggtatggaggattag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acatcttattgaaagtaagtaaatgatactgaaaatatggtaacaggtatggaggattag 682
Query: 483 tttgagtaaaattaaagaggaaatattattatgaagaataagaaaacatggctaccttgg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttgagtaaaattaaagaggaaatattattatgaagaataagaaaacatggctaccttgg 742
Query: 543 aaaagagactgtggaatcaaatgtactagtagatgtttgtnca-tcatggaaaaaaccca 601
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 743 aaaagagactgtggaatcaaatgtactagtagatgtttgt-caatcatggaaaaaaccca 801
Query: 602 aaggaacaaaatcatatacaattttgaaatagttgaataatctaagatatttctatgtct 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aaggaacaaaatcatatacaattttgaaatagttgaataatctaagatatttctatgtct 861
Query: 662 aagtcata 669
||||||||
Sbjct: 862 aagtcata 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_k01.g1 MSMg01no501_k01.g1 CHROMAT_FILE:
MSMg01no501_k01.g1 PHD_FILE: MSMg01no501_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:29 2005
(389 letters)
>mm_chr16_39561545_39562333
Length = 789
Score = 623 bits (322), Expect = 0.0
Identities = 346/358 (96%), Gaps = 8/358 (2%)
Strand = Plus / Minus
Query: 1 caaaaactgtatgcatatacatacaagtgcaggtaagcattcatacaaataatatataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 caaaaactgtatgcatatacatacaagtgcaggtaagcattcatacaaataatatataaa 295
Query: 61 taaatacaaccttttgaaaactataaattattggtgggaaaagaacatgaagtttaatca 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 294 taaatacaaccttttgaaaactataaattagtggtgggaaaagaacatgaagtttaatca 235
Query: 121 gtgaagactcaagaaatggcaataaacacaacacaatttttt----ttattgcataaaat 176
||||||||||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 234 gtgaagactcaggaaatggcaataaacacaacacaa----ttgaagttattgcataaaat 179
Query: 177 ttaataaaatgtaattaatcaaaaataaaacaaaaaatataagtatatttcatataaact 236
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 178 ttaataaaatgtaattaatcaaaaataaaagaaaaaatataagtatatttcatataaact 119
Query: 237 atttgaacctaattgaaatctgatggttgaaacactaccatttcttggtttctaatactc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 atttgaacctaattgaaatctgatggttgaaacactaccatttcttggtttctaatactc 59
Query: 297 atttaaaaaaagcaatcttcctggtggaaactgctgatcctaacactggagaaaggat 354
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 58 atttaaaaaaagcaatcttcctggtggaaactgctgatcctaagactggagaaaggat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
