Query= MSMg01no502_l13.b1 MSMg01no502_l13.b1 CHROMAT_FILE:
MSMg01no502_l13.b1 PHD_FILE: MSMg01no502_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:50 2005
(651 letters)
>mm_chr16_66796163_66797213
Length = 1051
Score = 990 bits (512), Expect = 0.0
Identities = 533/542 (98%), Gaps = 5/542 (0%)
Strand = Plus / Minus
Query: 114 aactacttacaatgaaatacaatggaccctgacaagcaatgagcgaagaatgcctagaaa 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 aactacttacaatgaaatacaatggaccctgacaagcaatgagcgaagaatgcctagaaa 992
Query: 174 gtaaactattactaagcagccatcctatgcatatcagacattatgaacttacatttattg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 gtaaactattactaagcagccatcctatgcatatcagacattatgaacttacatttattg 932
Query: 234 agaatacacatgttattgcaaaaagaaacccagttttacacttgagaatgacttaatatt 293
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 agaatacacatggtagtgcaaaaagaaacccagttttacacttgagaatgacttaatatt 872
Query: 294 tatgacttcttttgggaaatttttgagtctaagagattaagaagttctaaataaaatact 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tatgacttcttttgggaaatttttgagtctaagagattaagaagttctaaataaaatact 812
Query: 354 ttttttcttaaaatttaattctattttatcctcacttttgggggctttgcagttataaat 413
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 811 ttttttcttaaaatttaattctattttatccccacttttgggggctttgcagttataaat 752
Query: 414 tattgctaaaaacaaaccaagcatgatacagtttcatagattacaaattactaagtcaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tattgctaaaaacaaaccaagcatgatacagtttcatagattacaaattactaagtcaaa 692
Query: 474 atgaggaaagagaagaaagtgacaactgacataagctcattatacaaatataagtgtaag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 atgaggaaagagaagaaagtgacaactgacataagctcattatacaaatataagtgtaag 632
Query: 534 tgtagatagtgtcactgaatgggactcattttaaaacaatagggtattttttattt---- 589
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 631 tgtagatagtgtcactgaatgggactcattttaaaacaatagggtatttttt-tttaaaa 573
Query: 590 ttttttattaggtattttccttgtttacattttcaatgctatcccaaaggtcccccatat 649
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttttttattatgtattttccttgtttacattttcaatgctatcccaaaggtcccccatat 513
Query: 650 cc 651
||
Sbjct: 512 cc 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_l13.g1 MSMg01no502_l13.g1 CHROMAT_FILE:
MSMg01no502_l13.g1 PHD_FILE: MSMg01no502_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:50 2005
(670 letters)
>mm_chr16_66753519_66754589
Length = 1071
Score = 1220 bits (631), Expect = 0.0
Identities = 661/671 (98%), Gaps = 1/671 (0%)
Strand = Plus / Plus
Query: 1 tataattttctgtcacaatcacatatatgttgagatctaacgctaaaatcattatgaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataattttctgtcacaatcacatatatgttgagatctaacgctaaaatcattatgaaat 260
Query: 61 ttaaacatttttt-ctacatgaaaaacactccatgtaatagtattcaagaaagcatcatg 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaacatttttttctacatgaaaaacactccatgtaatagtattcaagaaagcatcatg 320
Query: 120 ctctgactcacaagaaagaaattcagcaaaatttacgtctaatattttcttgatgacaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgactcacaagaaagaaattcagcaaaatttacgtctaatattttcttgatgacaaa 380
Query: 180 ggaggactttcaagaatcttctgttttatcatgtacttgtttgaaatgcccattggcttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaggactttcaagaatcttctgttttatcatgtacttgtttgaaatgcccattggcttc 440
Query: 240 atttttatttacaaatcccatagttagccaatggatttcattaaggttttatttatcaaa 299
|||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 441 atttccatttacaaatcccatagtgagccaatagatttcattaaggttttaattatcaaa 500
Query: 300 gagatgtttcaaaacaccgttactctttactaatatttccacaggatattgggggaaagt 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagatgtttcaaaacactgttactctttactaatatttccacaggatattgggggaaagt 560
Query: 360 gtaatgttcactaacacttgattccaaactatggattaagaaaagcattttagataagga 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 gtaatgttcactaacacttgattccaaactacggattaagaaaagcattttagataagga 620
Query: 420 aattattttataatggtgtgaaaaaaatctcttgcttatgtcatcaggcttgaagggaaa 479
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 aattatttcataatggtgtgaaaaaaatatcttgcttatgtcatcaggcttgaagggaaa 680
Query: 480 caccaataaatatgaaacgtttgtgaattggagatcacaattattgaaattgataaatgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccaataaatatgaaacgtttgtgaattggagatcacaattattgaaattgataaatgt 740
Query: 540 agagggatattaattttgttgtgttcagaaaaggcagatcctgagagggatatcactcac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agagggatattaattttgttgtgttcagaaaaggcagatcctgagagggatatcactcac 800
Query: 600 atgtttttcccactgcatagactgagaccacttttaacactcaagcccaagatttaattg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgtttttcccactgcatagactgagaccacttttaacactcaagcccaagatttaattg 860
Query: 660 acagaaaaaga 670
|||||||||||
Sbjct: 861 acagaaaaaga 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space: 700260
Effective search space used: 700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
