BAC Information

Click to search

BAC

Clone NameMSMg01-502P07
Chromosome16 (Build37)
Map Location 84,292,821 - 84,292,940
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572, EG621729, LOC640489
Downstream geneLOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P07.T7 (MSMg01no502_p07.b1)MSMg01-502P07.TJ (MSMg01no502_p07.g1)
ACCAG578186AG578187
length727723
length of high quality
(start - end)
179 (426 - 604)123 (129 - 251)
definitionCHROMAT_FILE: MSMg01no502_p07.b1 PHD_FILE: MSMg01no502_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:06 2005CHROMAT_FILE: MSMg01no502_p07.g1 PHD_FILE: MSMg01no502_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAAAAACCTAAAATTTGCGGCCGCGAAANGAATCACATTCGGAACTGGG
GCGCGGAANNCNNTTGTGCTTAACGCACGGGAAANNACNCANNNNNNNGC
AANANAAANNCAGNNGGTTTCCCCAGAGAAAAGAANAAGGANANACACGG
CCNCCGGGCCANANAACACCAGGCGGCAGAAGCCANCNAAGAAAGGCNAN
GGCAACCAAGAGAGNCNCCCGGAGNNGGCCCACGGNNANCCAGGGCNGCT
TTTTGTGCACTCTGAGATGCACGGTCCTCAGAGATTTCATCCCAGGATTG
CTTCNTGATACTGATTTTTTTTTTTTGCCACCCNANAGGGCAGAACNNCC
GCAGAANCTATATGAACACGCACCTNCATGTAGTAATGCTGTGTAGATGA
ACTGATGATTCACAACCCCTGATAGTGATTTTACAGAATTCCTAAATTGA
AAAAGGTGATCTAAAGCCCCCTGTAGAATAAAAGCTGCAGATAGAGCTCC
ATAAACCTTCATGTGTCATGGGTTAATTACACTAGGAAAAGAAAGCTGGT
ATGAAACAAATTTATGACCAAGGAAAACATTCCTACTGGTTAGGAATGAA
GCCACTATCTTGTAACTAAAGGTCATAAAACTGGGAATGGACAATTCTTT
GTATGTGCAAGGGTGGAAAATAAATGATGGACTGTCTATACAAAACTTCC
AAAATATAATACATAAGCAGATGATTT
CCCAACCGATGATAGGGGTATCCGGGNGGNNGCCCGTTGGTCATTTGCGG
GNGAANNNANNNAATTTCNTTATTTGGGNNGAAAANNNNCAGANNACACT
GGATACTCCNCCTAATATTTTACCCCTGTCCAAACATTGGTGCTTAAGTG
ATCCTTATACATGTTACCCCATATCACACATACTTTTGAGGGACACCTTT
TTCTCTCCATCATTAGCATTTACACATCAAGGTGATATTCTGAAGCTATT
TTTTTTCTTTTGTAACCAAATGAAACATCTAAGAACCATTTCATTCCATA
AGGAGNACCCCAAAAGTTTTTTTTTTACAGAGCAANGCGCACCCNAACGC
AAACCAGATTTTTTTTCCGACTAGACAGAAGAATTTTGACCCTGGCATCT
CCCCAGGTGCCATACAACGCGTCTAACTGTAAATTTTCCATTTTTCTAAA
TGCACTTGCACTTTGTATTATTTTCCTGTCAACAAAAACTTTATCTTTTT
CAAGGGTCATGCCAGCCACTCCCTATTCTTCTCATTATTGCACCAACTAC
AATTTAATAAGCCTGAATCCTGAATTCTTAGTTCCCAAATCCAAATAATT
ATCACATTTCAATTTCCAAATATTTGATTGTATCATTCTAACATTATTTT
GTTTTGTTTCTCTCCCGGTTATGCTGCCAAGTTATACTACATAAAATGAA
ATAACGAAGTTCTGGATACTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p07.g1 MSMg01no502_p07.g1 CHROMAT_FILE:
MSMg01no502_p07.g1 PHD_FILE: MSMg01no502_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:06 2005
         (123 letters)



>mm_chr16_84292621_84293143
          Length = 523

 Score =  224 bits (116), Expect = 1e-63
 Identities = 119/120 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaaacattggtgcttaagtgatccttatacatgttaccccatatcacacatacttttg 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tccaaacattggtgcttaagtgatccttatacatgtaaccccatatcacacatacttttg 260

                                                                       
Query: 61  agggacacctttttctctccatcattagcatttacacatcaaggtgatattctgaagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggacacctttttctctccatcattagcatttacacatcaaggtgatattctgaagcta 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)