Query= MSMg01no503_n11.b1 MSMg01no503_n11.b1 CHROMAT_FILE:
MSMg01no503_n11.b1 PHD_FILE: MSMg01no503_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:14 2005
(558 letters)
>mm_chr16_40567866_40568821
Length = 956
Score = 903 bits (467), Expect = 0.0
Identities = 534/563 (94%), Gaps = 16/563 (2%)
Strand = Plus / Plus
Query: 1 gagattttccagcactgcctcccactcaatgagaagtggagatgagcacgtccctatttg 60
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 gagattttccatcactgcctcccactcaatgagaagtggagatgagcacatccctatttg 260
Query: 61 acatctaatttccccggggtatgcttcccaacttgttagttgttctgtcaatctgtattc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 acatctaatttccccggggtatgcttcccaacttgttagttgttctgtcaatatgtattc 320
Query: 121 agttccttttatttagttttcttctttgtttgtttttatgtttcagctctttactaggct 180
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 321 agttccttttatttagttttcttctttgtttgtttttatgtttcagcacttttctaggct 380
Query: 181 cattgcaaaaacagagaaacttaatgtacagtcattttccccaagttcgtaaatttatat 240
||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |
Sbjct: 381 cattgcaaaaacagagaaacttaatgtgcagtcattgtccccaagttcgtaaaa--aga- 437
Query: 241 ta-----taaacaattgcttgataaccaaagtgtcagacattggattaaccattcaagtt 295
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 -agaaggtaaacaattgcttgataaccaaagtgtcagacattggattaaccattcaagtt 496
Query: 296 tagcggttcatgtcaattaatttataattcgtttatgaggaagtgttttcacatgtggaa 355
|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct: 497 tagcggttcatgtcaatt----tataattcgttcatgaggaaatgttttcacatgtggaa 552
Query: 356 aacactactggatctgccatgaaggaaaacaaaaacaatctgttgtgtcatatgccagag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aacactactggatctgccatgaaggaaaacaaaaacaatctgttgtgtcatatgccagag 612
Query: 416 aatgaagcacatttcattttcagtcaatgttggagctatgggatcctgaagaccacagac 475
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 613 aatgaagcacatttcattttcagtcaatgttggagctatgggatcctgaagatcacagac 672
Query: 476 ctctgcatttctggctaccacttatacatgtacaatgtctgtatgttt--tttttctctt 533
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct: 673 ctctgcatttctggctaccacttacacatgtacaatgtctgtatgtttcttttttct-tt 731
Query: 534 tttttttaattttggtttttttc 556
|||||||||||||||||||||||
Sbjct: 732 tttttttaattttggtttttttc 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 956
Length adjustment: 10
Effective length of query: 548
Effective length of database: 946
Effective search space: 518408
Effective search space used: 518408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_n11.g1 MSMg01no503_n11.g1 CHROMAT_FILE:
MSMg01no503_n11.g1 PHD_FILE: MSMg01no503_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:14 2005
(498 letters)
>mm_chr16_40781522_40782420
Length = 899
Score = 884 bits (457), Expect = 0.0
Identities = 487/501 (97%), Gaps = 9/501 (1%)
Strand = Plus / Minus
Query: 1 cttcctaaagggctaacctcttcaggctgtcatgtgtatagataggttttcagtggaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 cttcctaaagggctaacctcttcaggctgtcatgtgtatagataggttttcagtggaaga 638
Query: 61 ataagataggaacacagatatttcctccatagcactttctgacattttcgttcagttatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ataagataggaacacagatatttcctccatagcactttctgacattttcgttcagttatt 578
Query: 121 tcagtgtttgagatgtgtagttaaacactcatcatataatcgttttagaagcataaaaat 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcagtgtttgaaatgtgtagttaaacactcatcatataatcgttttagaagcataaaaat 518
Query: 181 caatctctatatagcatttaatgatttttgcttaatattctatttagtacaatgtttttt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 517 caatctctatatagcatttaatgatttttgcttaatattctatttagtacaatg----tt 462
Query: 241 ----tttaataactagttctggttttttttttaagttttcagacaaaagaagtgactgtc 296
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aacatttaataactagttctcgttttttttttaagttttcagacaaaagaagtgactgtc 402
Query: 297 tactagaacatttcatcttttaaaaacacatttttacctcttaattattttgttcattca 356
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tactagaacacttcatcttttaaaaacacatttttacctcttaattattttgttcattca 342
Query: 357 gtcagtgg-aaaaaaatcccagataataatatgacttcgttctgaactgacatgaaaact 415
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtcagtggaaaaaaaatcccagataataatatgacttcgttctgaactgacatgaaaact 282
Query: 416 aagggccttaaaacattgaaagcatgaaagactgcatacagcatcgtctcaggcacacat 475
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 281 aagggccttaaaacattgaaagcatgaaagacagcatacagcatcatctcaggcacacat 222
Query: 476 taataaggaattcgtaattag 496
|||||||||||||||||||||
Sbjct: 221 taataaggaattcgtaattag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space: 433832
Effective search space used: 433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
