Query= MSMg01no504_j20.b1 MSMg01no504_j20.b1 CHROMAT_FILE:
MSMg01no504_j20.b1 PHD_FILE: MSMg01no504_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:16 2005
(524 letters)
>mm_chr16_72335383_72336306
Length = 924
Score = 319 bits (165), Expect = 3e-91
Identities = 277/319 (86%), Gaps = 10/319 (3%)
Strand = Plus / Minus
Query: 3 gatggctggaactgatgagtacataagtctgaaggttgacaaagatgcactcttgctaag 62
|||| ||||| |||||||||| | |||||| |||| ||||||||||| ||||| |||||
Sbjct: 651 gatgcctggagctgatgagtatacaagtctaaaggctgacaaagatgaactctcactaag 592
Query: 63 caggatgtttttcatagcttggtgctatccttgtaacattagatagctaaacagaata-- 120
||||||| ||||||||||||||||||||| ||||||| |||||| ||| ||||| ||
Sbjct: 591 caggatggttttcatagcttggtgctatcattgtaacgttagatggctgcacagactacc 532
Query: 121 -ccattgtgtcttgtgatctggttatctttccaccagatcataaacctaaaggcaacata 179
||| || |||||| |||||||||||||||||||||||| ||||||||| ||| |
Sbjct: 531 tcca---tgccttgtg----ggttatctttccaccagatcataatcctaaaggcgacaca 479
Query: 180 aagcttactggataaaaatgtggaacctgagactaatgtaatgatcagttgtgaccttgt 239
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 478 aagcttactggataaaaatgtggaacctgagactcatgtaataatcagttgtgaccttgt 419
Query: 240 aaattcttttttatccttgtggggtggaatcctagacttctgtaaaagaatttaaaaagc 299
|||||||| | | ||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct: 418 aaattcttgctaacccttgtgggatggaatcctagacttctgtaaaagaaaaaaaaaaac 359
Query: 300 ttgtttaatactaaatcag 318
|||||||||||| ||||||
Sbjct: 358 ttgtttaatactgaatcag 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_j20.g1 MSMg01no504_j20.g1 CHROMAT_FILE:
MSMg01no504_j20.g1 PHD_FILE: MSMg01no504_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:16 2005
(579 letters)
>mm_chr6_68336250_68337228
Length = 979
Score = 750 bits (388), Expect = 0.0
Identities = 531/584 (90%), Gaps = 17/584 (2%)
Strand = Plus / Plus
Query: 1 tgcaggcaagcacatcacggggagaaaacgggcat-agatcttcatgtgtcccaaatgca 59
|||||| ||| |||||| ||||||||||||||||| | |||||||||||| ||||| |||
Sbjct: 201 tgcaggaaagaacatcatggggagaaaacgggcatca-atcttcatgtgtaccaaaggca 259
Query: 60 gagacacgtttacaa-gagcatgctgtttggc-aaaccgtgcataaccagtgtggcccta 117
|||||| |||||||| || |||||||||| || ||||| |||||||||||||||||| |
Sbjct: 260 gagacatgtttacaagga-catgctgttttgctaaacc-agcataaccagtgtggcccaa 317
Query: 118 acatcctggtgtctcagacacttgaaagcatcttagggacagttgctcaaggaatcagag 177
| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaatcctggtatctcagacactttaaagcatcttagggacagttgctcaaggaatcagag 377
Query: 178 gaggcacccagtttggagcatcagttcactcagtcttgttttcagccacatcaaactatc 237
|||| ||||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 378 gaggtacccagtttagcgcatcagttcactcagtcttgttttcagccacatcaacctatc 437
Query: 238 agctgattataattgaacatatttggtaaaaagagcacagctccccagagggagcttgct 297
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 438 agctgactataattgaacatatttggtaaaaagaccacagctccccagagggagcatgct 497
Query: 298 tctggaagtttgcaggtagaagcatgcccagctaagtggctgtccacacacagcacattg 357
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 498 tctggaagtttgcaggtagaagcatgcccaggtaagtggctggccacacacagcacattg 557
Query: 358 caggctgctcagggttcatgtggaagtccaagac--ccaccctccaaagcctctcatttt 415
|||||||||||||| ||||| | | ||||||||| || |||||| || | ||
Sbjct: 558 caggctgctcaggggtcatgagcatgtccaagacaacccccctcc-----ct----tgtt 608
Query: 416 gcaggcctagcccaggattagttgccagcacatgtctgaaatgtactttttgctatagat 475
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 609 gcaggcctagcccaggattagctgccagtacatgtctgaaatgtactttttgctatagac 668
Query: 476 ctcgaatgtgatgggagaagttaacacgtcagggcaaggcagaagaaaggggccaatcag 535
||||| |||||||||||||| ||||| ||||||||||||||| ||||| ||||||| |||
Sbjct: 669 ctcgattgtgatgggagaaggtaacatgtcagggcaaggcaggagaaaagggccaaacag 728
Query: 536 gactggagaatcaggggaggtacaaagatgagctgagatgagga 579
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gactggagaatcaggggaggtacaaagatgagctgagatgagga 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
