Query= MSMg01no504_k03.b1 MSMg01no504_k03.b1 CHROMAT_FILE:
MSMg01no504_k03.b1 PHD_FILE: MSMg01no504_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:17 2005
(473 letters)
>mm_chr16_34234408_34235289
Length = 882
Score = 791 bits (409), Expect = 0.0
Identities = 454/473 (95%), Gaps = 9/473 (1%)
Strand = Plus / Minus
Query: 1 atgcattctctcccctcctgtgcttgattctgtcacatagtccatgagaaataaaaatcc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 673 atgcattctctcccctcctgtgcttgattctatcacatagtccatgagaaataaaaatcc 614
Query: 61 atcctcagtaatttaattatagtccactgttgtagagccaggttgctctctttggggcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atcctcagtaatttaattatagtccactgttgtagagccaggttgctctctttggggcac 554
Query: 121 ctcggtgcctagtccagctcctgacacagagttggtaagtaaagattcagtagtagcaat 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cttggtgcctagtccagctcctgacacagagttggtaagtaaagattcagtagtagcaat 494
Query: 181 tatcattatttccaatgtgtgtatggttcttataataacactttgggaaactgggaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tatcattatttccaatgtgtgtatggttcttataataacactttgggaaactgggaatat 434
Query: 241 ggttttttgagtgaagtgctcatcacacaagcacaaggaactgaatttggaatggcagca 300
|| | | || ||||||||||||||||||||| |||||||||||| ||||||| |||||||
Sbjct: 433 ggctctgtgggtgaagtgctcatcacacaagtacaaggaactgagtttggaacggcagca 374
Query: 301 ctcagacacacacacaagtcaggcacagcagggtgagtgcagcactcacacacacacaa- 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctcagacacacacacaagtcaggcacagcagggtgagtgcagcactcacacacacacaag 314
Query: 360 gcaagcacagcagggtgagtgcagcactcag------acacaaggcaggcacagcagagt 413
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 313 gcaagcacagcagggtgagtgcagcactcagacacacacacaaggcaggcacagcagggt 254
Query: 414 gagtgcagcactc--acacacacacaaggcaggcacagcagggtgagtgcagc 464
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagtgcagcactcagacacacacacaaggcaggcacagcagggtgagtgcagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 882
Length adjustment: 10
Effective length of query: 463
Effective length of database: 872
Effective search space: 403736
Effective search space used: 403736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_k03.g1 MSMg01no504_k03.g1 CHROMAT_FILE:
MSMg01no504_k03.g1 PHD_FILE: MSMg01no504_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:17 2005
(516 letters)
>mm_chr16_34063252_34064167
Length = 916
Score = 820 bits (424), Expect = 0.0
Identities = 493/524 (94%), Gaps = 16/524 (3%)
Strand = Plus / Plus
Query: 1 tctgaatgataaatacatatgtgtgtttataagcatgcacagcacagtatgaatatgtcc 60
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tctggatgataaatacatatgtgtgtttataagcatgcacagttcagtatgaatatgtcc 260
Query: 61 catgtggcctaggacaatgagcctgccagg-ttttcgaagaggaatgttagttgcatatt 119
| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 261 cgtgtggcctaggataatgagcctgccaggtttttc-aagaggaatgttagttgcatatt 319
Query: 120 cagtgaggtcctgaggctgtataccatcggtgtccggtatggctggcttcccagcaaacc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagtgaggtcctgaggctgtataccatcggtgtccggtatggctggcttcccagcaaacc 379
Query: 180 atctggttggcatcatggcgcctaggctgctctgtgctggagaatgaaggacgtttctat 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 380 atctggttggcatcatggcgcctaggctgctctgtgctggagaatgaaggatgtttctat 439
Query: 240 a-------tttttttcagtgagaagtaaactggaggggcaaagagggaaaccctggcttt 292
| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agagccag-------cagtgggaagtaaactggaggggcaaagagggaaaccctggcttc 492
Query: 293 gtaacggtggcctcttgatgccatttcagttactcctgctgcattttagcctgaacttgg 352
||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 493 ataatggtggcctcttgctgccatttcacttactcctgctgcattttagcctgaacttgg 552
Query: 353 cacactcggtgtggcacaggatagtctttctctccctttgtagtcattctcaagtctcaa 412
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cacactcagtgtagcacaggatagtctttctctccctttgtagtcattctcaagtctcaa 612
Query: 413 acatacgttgcaaggccctgctcctgctggttgcaccaaagttcttgtgccagcttcaag 472
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acacacgttgcaaggccctgctcctgctggttgcaccaaagttcttgtgccagcttcaag 672
Query: 473 actctcttcttgctgggcagtgatggtgtacacctttaatccca 516
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 actctcttcttgctgggcagtgatggtgtacacctttaatccca 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
