BAC Information

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BAC

Clone NameMSMg01-504O04
Chromosome16 (Build37)
Map Location 4,294,815 - 4,295,241
singlet/doubletsinglet
Overlap geneAdcy9
Upstream geneLOC100042251, LOC100042925, LOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332
Downstream geneEG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504O04.T7 (MSMg01no504_o04.b1)MSMg01-504O04.TJ (MSMg01no504_o04.g1)
ACCAG579656AG579657
length730736
length of high quality
(start - end)
485 (76 - 560)442 (84 - 525)
definitionCHROMAT_FILE: MSMg01no504_o04.b1 PHD_FILE: MSMg01no504_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:39 2005CHROMAT_FILE: MSMg01no504_o04.g1 PHD_FILE: MSMg01no504_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTGTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCCAAGAG
GATCCGCGGAATTCAAACTTCAATGATTTCTACATGACAGAATACACATT
ACACAGGTAAGGTAGATAATCAAATCTGTTTGAGGTTAAGTTTACTATAT
TAATCCTGCCAATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGATCT
TCAATTTCTTTCTTCAGAGACATGAAGTTCTTATCATACAGATCTTTCAC
TTCCTTAGAGTCACACCAAGGTATTTTATATTATTTGTGACTATTGTGAA
GGGTGTTGTTTCCCTAATTTCTTTCTCAACCTGTTTATCCTTTGTGTAGA
GAATGGCAATTGACTTGTTTGAATTAATTTTATATCCAGCTACTGCACTG
AAGCTGTTTATCAGGTTTACGACCTCTCTGGTGGAATTTTTGGGGTAACT
TATATTATAATATCATATCATCTGCAAATAGTGATATTTTGACTTCTTCC
TTTCCAATTTGTATCCCCTAAATCTCCTTTTGTTGTCGAATTGCTCTGGC
TAGAACTTCCAATACTATATTGAATAGGTAGGGAGAAAGTGGTCTTCCTT
GTTTAGTCCCTGATTCTAGAGGGACTAGTTTCTCCTCTTTTACTTTGATG
TTGGTTATTGGCTTGCTGTATACTGCTTTTAATACGTTTATGTAGGGGTC
CTTGAATTCTTGATCTTTCCAAGACTTTTA
AAAAATCACGATGACTGTGGTAGGCCTGGCGGTCGCTCTTTTCAAAGAGG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAACAGCTTTTACCT
TCGGGTGCCTTGTGAGCCCTTCTTGGTGACATGGTCAGAGCTTTGGGTTC
CCCTCTTGGATCTAGAGGAGTGAAGTAGGGGCCTCCCATCTACCTCCCTG
CTACAATTCAAACAGATTTTGGCGGGAACTAATAGATGAACCTTACCAAG
ACCCCTTCTACATGGAGGGTTCTCAGAGGTACAGCCCAGTCCCAGTTGTA
GCTAGGACTAGCAGGGCAGTGGTTGCCTGGTAGTAAACAAAAGCCTGAAT
CTATTTATTATTAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAGATTCACCTTTTACAAAAGAGAAGGTGTTCACCAGCCTTGTG
TTGCTGGGATAAAATTCCCCGGACAGCTTATAGAAGAAAGTGCTGAGTTG
GGCTTATGGTTTCAGAGGATCATGACCAAATATTTACCTCATGTCACCCA
AAAGGGAAGTTACGTGAACTCTTCTTGAGGTGCTTTTAATAATGCCTTTT
TATTTCCTGTAATACCTTATTCATCTTCTTTCCAGTTCCATTGCGAGGTC
TCTCTTGGACTCAGTACAGAAATTCTTGGGAGTTTTTAATCTGTGGCTTT
ATTTCCCGAAAAATTGCATGTACATGCATGCATGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_o04.g1 MSMg01no504_o04.g1 CHROMAT_FILE:
MSMg01no504_o04.g1 PHD_FILE: MSMg01no504_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:39 2005
         (442 letters)



>mm_chr16_4294768_4295609
          Length = 842

 Score =  748 bits (387), Expect = 0.0
 Identities = 422/443 (95%), Gaps = 17/443 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaacagcttttaccttcgggtgccttgtgagcccttcttggtgacatggtcagagctt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 474 attaacagcttttaccttcgggtgccttgtgagcccttcatggtgacatggtcagagctt 415

                                                                       
Query: 61  tgggttcccctcttggatctagaggagtgaagtaggggcctcccatctacctccctgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgggttcccctcttggatctagaggagtgaagtaggggcctcccatctacctccctgcta 355

                                                                       
Query: 121 caattcaaacagattttggcgggaactaatagatgaaccttaccaagaccccttctacat 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 354 caattcaaacagattttggcaggaactaatagatgaaccttaccaagaccccttctacat 295

                                                                       
Query: 181 ggagggttctcagaggtacagcccagtcccagttgtagctaggactagcagggcagtggt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 294 ggagggttctcagaggtacagcccagtcccagttgtagctgggactagcagggcagtggt 235

                                                                       
Query: 241 tgcctggtagtaaacaaaagcctgaatctatttattattaataataataataataataat 300
           |||| |||||||||||||||||||||||||||               |||||||||||||
Sbjct: 234 tgccaggtagtaaacaaaagcctgaatctatt---------------taataataataat 190

                                                                       
Query: 301 aataataataataataataataatagattcaccttttacaaaagagaaggtgttcaccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aataataataataataataataatagattcaccttttacaaaagagaaggtgttcaccag 130

                                                                       
Query: 361 ccttgtgttgctgggataaaattcccc-ggacagcttatagaagaaagtgctgagttggg 419
           ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 129 ccttgtgttgctgggataaaattccccagg-cagcttatagaagaaagtgctgagttggg 71

                                  
Query: 420 cttatggtttcagaggatcatga 442
           |||||||||||||||||||||||
Sbjct: 70  cttatggtttcagaggatcatga 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)