BAC Information

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BAC

Clone NameMSMg01-506G09
Chromosome16 (Build37)
Map Location 29,057,575 - 29,058,118
singlet/doubletsinglet
Overlap genenone
Upstream geneFgf12, 1600021P15Rik, EG666717
Downstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506G09.T7 (MSMg01no506_g09.b1)MSMg01-506G09.TJ (MSMg01no506_g09.g1)
ACCAG580804AG580805
length736714
length of high quality
(start - end)
542 (80 - 621)508 (79 - 586)
definitionCHROMAT_FILE: MSMg01no506_g09.b1 PHD_FILE: MSMg01no506_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:35 2005CHROMAT_FILE: MSMg01no506_g09.g1 PHD_FILE: MSMg01no506_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTTAAACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTAGGATTGCTCAACATGGCATTCAGTCATAAATCAGCCT
GAAAATAGGCTCATACAGAAAATAGAAGGGAATTTAATTGAAGTTAAATA
CATAGGAAAGTATATTAATCCAAGTTATCTAAAGAGAAAGGGGGTATACA
TATATCCACAGATACTAATCTCCAAAGAAGGGAAGATTTAAAGAAATTCA
GGCCTTTGATCTCAAATGTAGGAATAAAGGTAGGAGATAGGGAGAAAGCC
TCTCTCAACAGATAATAACAAAGAGAGGGAGAGCTGCCATGTTGGGAAAA
GAAGTTGAGGAGATACACCATGCCTGAGAAGAGTGAAGAAGAGGGAGGCA
TAGCTGGCATGTGACGGAGCCAGGAGAAAGCATTCCAGTTAGGCCGCCTG
CCTGGGCCCAGGGCAACCAAGAGAGAATACAGGATTTAGTAAGTAATAAC
TTGGGATTATCGGCAGGAGGTAATTTAATCGCATGGAGGTTAGGAAGTGA
ATCAGCCATTGAGCTGATTAAGACATATTAAAATATAAGGCTGAGCGTGT
GTCTTTCATTCGTAAACCACTGGGGCCAGCTGTGGGGACACGCTACCCAG
AATTTATTTAAATAATTAATTCTACAGCCACTATGGGATTATTCAGCATC
CTATCATGTTACCCAGCAGATCTTTTCATAGACGTG
CCTGGTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGGCTGACCACTTTGTATT
GCACAGCCAGTTAGGGAATCATTCTTAGGAGCAGCCAAGTCTCCCTCTCT
CAGAAGTCATTAGTTGGCTGTAGTTCTTGGTCTAAAGGCCTCATAAAATC
TACCTTCATCTGAGTTAACAAGTTTATTAATATTATCATTGGTTACATCT
TATTTGTTTACGCATTTTTATGAGAGACTATTTCACAGCAGACTTCCTGA
TATTCTGGCTCTTTCAGTTTTCTCCATCCCTTTTTCATCTAATATATATA
TATATATATATATTATTCTCTGGTATCTATAGTACCTGAGCCACAGATGC
AGAACAGTGATGTAGTCCACTGAGATTGAGCCCCCACAGCCATTGATCTC
TGCATTGTTGAGGGTTTTTTATGATGTGGTCCATCTGCTATAAACAAAAA
CTTCTTTGATGAGGTGAGGCAACTACACTTATCTGTAGGTATAAAGGTAT
CAAAATGTAAATGAAGAAAATACCTAATTAAAAAAAAGAAAGTTATCATT
CAATATTTATTCCACAAATTATGGAAATTGAAGAGAAATTATCTGTAATA
AATAATGATTTTTATATCTGTGTGCCTTAATTTCAATCCACTTTAATATA
ATTAAAAATAATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_g09.b1 MSMg01no506_g09.b1 CHROMAT_FILE:
MSMg01no506_g09.b1 PHD_FILE: MSMg01no506_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:35 2005
         (542 letters)



>mm_chr16_29057375_29058318
          Length = 944

 Score =  978 bits (506), Expect = 0.0
 Identities = 534/544 (98%), Gaps = 2/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcagtcataaatcagcctgaaaataggctcatacagaaaatagaagggaatttaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cattcagtcataaatcagcctgaaaataggctcatacagaaaatagaagtgaatttaatt 260

                                                                       
Query: 61  gaagttaaatacataggaaagtatattaatccaagttatctaaagagaaagggggtatac 120
           |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct: 261 gaagttaaatacataggaaagtatattaatccaagttatctaaagatagaggggatatac 320

                                                                       
Query: 121 --atatatccacagatactaatctccaaagaagggaagatttaaagaaattcaggccttt 178
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 atatatatccacagatactaatctccaaagaagggaagaattaaagaaattcaggccttt 380

                                                                       
Query: 179 gatctcaaatgtaggaataaaggtaggagatagggagaaagcctctctcaacagataata 238
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 gatctcaaatgtaggaacaaaggtagcagatagggagaaagcctctctcaacagataata 440

                                                                       
Query: 239 acaaagagagggagagctgccatgttgggaaaagaagttgaggagatacaccatgcctga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaagagagggagagctgccatgttgggaaaagaagttgaggagatacaccatgcctga 500

                                                                       
Query: 299 gaagagtgaagaagagggaggcatagctggcatgtgacggagccaggagaaagcattcca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagagtgaagaagagggaggcatagctggcatgtgacggagccaggagaaagcattcca 560

                                                                       
Query: 359 gttaggccgcctgcctgggcccagggcaaccaagagagaatacaggatttagtaagtaat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttaggccgcctgcctgggcccagggcaaccaagagagaatacaggatttagtaagtaat 620

                                                                       
Query: 419 aacttgggattatcggcaggaggtaatttaatcgcatggaggttaggaagtgaatcagcc 478
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 aacttgggattatcggcaggaggtagtttaatcgcatggaggttaggaagtgaatcagcc 680

                                                                       
Query: 479 attgagctgattaagacatattaaaatataaggctgagcgtgtgtctttcattcgtaaac 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attgagctgattaagacatattaaaatataaggctgagcgtgtgtctttcattcgtaaac 740

               
Query: 539 cact 542
           ||||
Sbjct: 741 cact 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 944
Length adjustment: 10
Effective length of query: 532
Effective length of database: 934
Effective search space:   496888
Effective search space used:   496888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)