BAC Information

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BAC

Clone NameMSMg01-506I06
Chromosome16 (Build37)
Map Location 89,547,765 - 89,548,085
singlet/doubletsinglet
Overlap genenone
Upstream geneCldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506I06.T7 (MSMg01no506_i06.b1)MSMg01-506I06.TJ (MSMg01no506_i06.g1)
ACCAG580892AG580893
length740750
length of high quality
(start - end)
495 (81 - 575)323 (343 - 665)
definitionCHROMAT_FILE: MSMg01no506_i06.b1 PHD_FILE: MSMg01no506_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:45 2005CHROMAT_FILE: MSMg01no506_i06.g1 PHD_FILE: MSMg01no506_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCTTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGCATCGTTCCGAACTACTCTATCTATTAGATGTTGAGC
CAAAACAAGATATTGACATGGCTATTGGTCACCTACTAGAACTACAGTGT
AAGATTCTATTGCTAAAGTCACCACCTCTTTGGTTTCAGTACGTGGAGAA
ATGAAACTGGAGCTGGGTTTGGAGCTTCTCCCTGCTGACTACATTTCATA
CTGATAGAGGGTGCTACTGAGTTTACTAGGAGAGAAAACTCAATAGTCTT
ATTCAGCTTCCAATACTGCATGCTCTACTTTTTTCTTGCTTGGCAAAGTC
GAAATAGTGGCAAGATTATTACAGATGTAACCAACTGCTTTCTGATTAGA
TTTGAGACCTGTTCCATGAGAGAGAATTCATTTCTTCTACTGTAAACCTG
GTCAGAAGTCCATGACAGAGGCCCAGGTTGCAAAGCAATGGTGGTGGCTG
GCTTGCTATATTGCCATGACATACTTGTCAGATTGCCTTCCAAACACTTA
TGTTTATATGCCCCAAGGATCAGTCTCACTCTTTGCTTTGATCAGAGGAC
TTCTATGTGTGCTGCTAAGACTCATATCCGATTTAAGTAATGGGGATTAG
ATGCCTTTGACCTTTAACCTTGCCTGTGTCACATACTCTAAAGCTTATTG
ATTTTTCCAGCACTATAATATATAAAGGGCATAATATCCT
TTTGTGACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATGTAGAATTATGAAA
AAAAACAAGGCAACATGATACTTTTAAAGGAACACAAAAACTGTCAACAT
ATTGTAGAGGAGAGGAAATTGTCAAAGTGTTTAAAAATGAATACTAAAGA
ACGATTTAGAGGGAAAAGCAAGAAAAAATAGAATATAGACGGTGTGGGGA
AATTAAGGAGATGGCTCACGATACAGATGATAAATTTAGTAAAGACACAG
AAGTCATAAAAAAATCCAATCAGAAATCATGGAATCTTTATACATCAATA
AATGAAATAAAAATTCCAGGTGAGAGCCTGAACAGCATTCTAGATTAAGG
AGGGGAAAGCCTGTAATCATGTGTTTTGGAATAACCAATTCAGTAAAAGT
GAAAAGAAAATTTAATACCTTTAGATCCAAATGTGTGGGACCATGAGGCA
AGCACACATTTGCAAGACGGACATTATAGAAGGTAAGAGGAAATGTGCGT
ATGTACGGGCGCACACACTTGCACATGCACGGAAGTGTTCAGTTAAACGA
AATAAATTGAAGCCTTTCCGAATCTTCAGAAAAATACAAATAACCAGAGC
TCAAGACGCTGTCAGTGCCGGCAATGCATTTGAAGACCAGAGGTCAACTC
CTGGGCATATTATAGCCAAATGGTCAAAAATAAGTACTAGGCATAGAAAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_i06.g1 MSMg01no506_i06.g1 CHROMAT_FILE:
MSMg01no506_i06.g1 PHD_FILE: MSMg01no506_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:45 2005
         (323 letters)



>mm_chr16_89547563_89548285
          Length = 723

 Score =  605 bits (313), Expect = e-178
 Identities = 319/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   tcaataaatgaaataaaaattccaggtgagagcctgaacagcattctagattaaggaggg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tcaataaatgaaataaaaattccaggtgagagcctgaacagcattctagattaaggaggg 464

                                                                       
Query: 63  gaaagcctgtaatcatgtgttttggaataaccaattcagtaaaagtgaaaagaaaattta 122
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 463 gaaagcctgtaatcatgtgttttggaataaccaattcggtaaaagtgaaaagaaaattta 404

                                                                       
Query: 123 atacctttagatccaaatgtgtgggaccatgaggcaagcacacatttgcaagacggacat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atacctttagatccaaatgtgtgggaccatgaggcaagcacacatttgcaagacggacat 344

                                                                       
Query: 183 tatagaaggtaagaggaaatgtgcgtatgtacgggcgcacacacttgcacatgcacggaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tatagaaggtaagaggaaatgtgcgtatgtacgggcgcacacacttgcacatgcacggaa 284

                                                                       
Query: 243 gtgttcagttaaacgaaataaattgaagcctttccgaatcttcagaaaaatacaaataac 302
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtgttcagttaaacaaaataaattgaagcctttccgaatcttcagaaaaatacaaataac 224

                                
Query: 303 cagagctcaagacgctgtcag 323
           |||||||||||||||||||||
Sbjct: 223 cagagctcaagacgctgtcag 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)