BAC Information

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BAC

Clone NameMSMg01-507G04
Chromosome16 (Build37)
Map Location 45,070,312 - 45,233,869
singlet/doubletdoublet
Overlap geneCcdc80, Slc35a5, Atg3, EG547267, Btla
Upstream geneAtp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021
Downstream geneCd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507G04.T7 (MSMg01no507_g04.b1)MSMg01-507G04.TJ (MSMg01no507_g04.g1)
ACCAG581549AG581550
length775768
length of high quality
(start - end)		676 (75 - 750)396 (324 - 719)
definitionCHROMAT_FILE: MSMg01no507_g04.b1 PHD_FILE: MSMg01no507_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:55 2005CHROMAT_FILE: MSMg01no507_g04.g1 PHD_FILE: MSMg01no507_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,070,312 - 45,070,987)(45,233,474 - 45,233,869)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCCGCGGA
ATTCAAGAGCACTTTTCCATGAAACAAACAAACTCCCTCTTCCAAATACT
ACGGAACTCATAAGATGGACGCAAATAACTCAATTCCTTGGTGAAAATCA
GTGAGTCTTCACAGCCTCAGCACAGTTTGCTTTATCTGTAGTTTCAGATC
AGAAAAATAGAGAAGAGAGAAAAAACAGTTTGTCTAAACACTAATCTGCT
ATGACTCAAAACCCCAATGAGTGCAAGCCAGACTCTACTTTCCACCCACT
CAGGGCTGGGCCTTTCACATTTGGTATCAGCTGACCAGAGCATCTTCATG
TAATATTGGCACTCTCGAAACTCCCAAGGGCTGGACTGAAAAAGCTGATC
CAGACCCTGTCCTCATCCACAACCAGAAAAGCTGTGGGGAGATGAGTGGC
AGCTGGTGAGCCAATGGGCGAGTAGCTGATGGAGTGGAAGCTTCAGCTAT
GACTCACGGAGATGCAGAACAAGGCCAAGTTGCCCTGCCCAGCTGTTCTA
GAGCTTCAAAACTAAATAGAGGAAAACCAGATGTTCACTTTTTTCAAAAA
TGAAATACCGACTACAAATGCAAAATGTAATTTTACTACCCAAATGCATA
CCACAGAGTACTTGCAGAATCAGAACAGACTTTTGCTAGCCTTCACGGGG
TGTCTAGGGGACAAATATAGAGAAAGGACTGCATATTTCTCATCTCCTTT
AGACTTCGTGCTACACTCCAGGGAG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAAACAACGTCATTTTTAAGGCTTCATAG
TTGATTTGCCTCAGATTTTCTAGAATAAACATGAAAGCAAGTTAAGAGGT
AAGTTATGAGGATGAGGTTTTCAAAAACTTGAAGAGAAAGGGTAAGGCTG
CTGACCAAAAGGAAGCACCTGACAATACAATACCTGCTGTGGTCAGATTT
ATGGCAAAAGGCAAGGAAGCCAAGGGTGGGAAGGCCAAGTGAAACCCTGT
CTCCAAAGTCATTTCCTCTCTCTGGTTAAGAGAGCTCAGCCAGCTCAGAT
CCTTTTTCATTTTCATGAGTACATTTGAACAACGAGGTGGCTGTGGACAC
ATATCTATCGTCCTTAGTGAGCTTACTGCTCGATTCATGAAACTATTATG
TCATGAGAAGTACTTTCTCTAAGTCAATCTACGATGTACTACTCTGTTCC
CTTCAAATGTGTCTGAGCTTGAGGTCTCATATAATGAGACTCATATTCTC
ATTGTTAGAGGCTCTAGGGATTGAGAACGAGGTCTGCCTCTGTGGAATTT
GCCTTCATATGGAAAAGAAACATGCTCAAGGGTGGGAGAATCCCACTGTC
CCTGGGTACAAAGCAGTTGGCATGGGCTGCTGGGGGATGATGCTTTGCTG
GAAGGCTGGGCTGCCCTTTGGTGAATGAACACCCTTGACCATCAGAGCAG
AGACAGGTGAGGTACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_g04.b1 MSMg01no507_g04.b1 CHROMAT_FILE:
MSMg01no507_g04.b1 PHD_FILE: MSMg01no507_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:55 2005
         (676 letters)



>mm_chr16_45070112_45071187
          Length = 1076

 Score = 1292 bits (668), Expect = 0.0
 Identities = 674/676 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacaaactccctcttccaaatactacggaactcataagatggacgcaaataactcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacaaactccctcttccaaatactacggaactcataagatggacgcaaataactcaat 260

                                                                       
Query: 61  tccttggtgaaaatcagtgagtcttcacagcctcagcacagtttgctttatctgtagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttggtgaaaatcagtgagtcttcacagcctcagcacagtttgctttatctgtagttt 320

                                                                       
Query: 121 cagatcagaaaaatagagaagagagaaaaaacagtttgtctaaacactaatctgctatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatcagaaaaatagagaagagagaaaaaacagtttgtctaaacactaatctgctatga 380

                                                                       
Query: 181 ctcaaaaccccaatgagtgcaagccagactctactttccacccactcagggctgggcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaaaaccccaatgagtgcaagccagactctactttccacccactcagggctgggcctt 440

                                                                       
Query: 241 tcacatttggtatcagctgaccagagcatcttcatgtaatattggcactctcgaaactcc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacatttggtaacagctgaccagagcatcttcatgtaatattggcactctcgaaactcc 500

                                                                       
Query: 301 caagggctggactgaaaaagctgatccagaccctgtcctcatccacaaccagaaaagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 caagggctggactgaaaaagctgatccagaccctgtcctcatccagaaccagaaaagctg 560

                                                                       
Query: 361 tggggagatgagtggcagctggtgagccaatgggcgagtagctgatggagtggaagcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggggagatgagtggcagctggtgagccaatgggcgagtagctgatggagtggaagcttc 620

                                                                       
Query: 421 agctatgactcacggagatgcagaacaaggccaagttgccctgcccagctgttctagagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctatgactcacggagatgcagaacaaggccaagttgccctgcccagctgttctagagc 680

                                                                       
Query: 481 ttcaaaactaaatagaggaaaaccagatgttcacttttttcaaaaatgaaataccgacta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcaaaactaaatagaggaaaaccagatgttcacttttttcaaaaatgaaataccgacta 740

                                                                       
Query: 541 caaatgcaaaatgtaattttactacccaaatgcataccacagagtacttgcagaatcaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaatgcaaaatgtaattttactacccaaatgcataccacagagtacttgcagaatcaga 800

                                                                       
Query: 601 acagacttttgctagccttcacggggtgtctaggggacaaatatagagaaaggactgcat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acagacttttgctagccttcacggggtgtctaggggacaaatatagagaaaggactgcat 860

                           
Query: 661 atttctcatctccttt 676
           ||||||||||||||||
Sbjct: 861 atttctcatctccttt 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_g04.g1 MSMg01no507_g04.g1 CHROMAT_FILE:
MSMg01no507_g04.g1 PHD_FILE: MSMg01no507_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:55 2005
         (396 letters)



>mm_chr16_45233274_45234069
          Length = 796

 Score =  766 bits (396), Expect = 0.0
 Identities = 396/396 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttaagagagctcagccagctcagatcctttttcattttcatgagtacatttgaacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggttaagagagctcagccagctcagatcctttttcattttcatgagtacatttgaacaac 537

                                                                       
Query: 61  gaggtggctgtggacacatatctatcgtccttagtgagcttactgctcgattcatgaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gaggtggctgtggacacatatctatcgtccttagtgagcttactgctcgattcatgaaac 477

                                                                       
Query: 121 tattatgtcatgagaagtactttctctaagtcaatctacgatgtactactctgttccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tattatgtcatgagaagtactttctctaagtcaatctacgatgtactactctgttccctt 417

                                                                       
Query: 181 caaatgtgtctgagcttgaggtctcatataatgagactcatattctcattgttagaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caaatgtgtctgagcttgaggtctcatataatgagactcatattctcattgttagaggct 357

                                                                       
Query: 241 ctagggattgagaacgaggtctgcctctgtggaatttgccttcatatggaaaagaaacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctagggattgagaacgaggtctgcctctgtggaatttgccttcatatggaaaagaaacat 297

                                                                       
Query: 301 gctcaagggtgggagaatcccactgtccctgggtacaaagcagttggcatgggctgctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gctcaagggtgggagaatcccactgtccctgggtacaaagcagttggcatgggctgctgg 237

                                               
Query: 361 gggatgatgctttgctggaaggctgggctgcccttt 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 gggatgatgctttgctggaaggctgggctgcccttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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