BAC Information

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BAC

Clone NameMSMg01-507H16
Chromosome16 (Build37)
Map Location 28,304,615 - 28,305,106
singlet/doubletsinglet
Overlap geneFgf12
Upstream geneOstn, Uts2d, Ccdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507H16.T7 (MSMg01no507_h16.b1)MSMg01-507H16.TJ (MSMg01no507_h16.g1)
ACCAG581619AG581620
length752757
length of high quality
(start - end)		661 (49 - 709)614 (80 - 693)
definitionCHROMAT_FILE: MSMg01no507_h16.b1 PHD_FILE: MSMg01no507_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:02 2005CHROMAT_FILE: MSMg01no507_h16.g1 PHD_FILE: MSMg01no507_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCC
GCGGAATTCCTGATCTTTTTCGACTTTTATCATGAATAGGTGTTGGATTT
TTGTCAAATGCTTTCTCCGCATCTAATGAGATGATCATGTGGTTTTTGTC
TTTGAACTGTTTTATATAATGGATTACGCTGATGGATTTCCATATATTAA
ACCATCCCTGCATCCCTGGAATGAAACCTACCTGGTCAGGATGGATGATG
GTTTTGATGTGTCTTGGATTCGGTTAGCAAGAATTTCATCGAGTATTTTT
GCATCGATATTCATAACGGAAATTGGTCTAAAGTTCTCTATCTTTGAAGG
GTCTTTCTGTGGTTTAGGTATCAGAGTATTTGTGGCTTCATAGAATGAAT
TGGGTAGAGTACCTTCTGCTTCTATTTTGTGGAATAGTTTGTGAAGAACT
GGAATTAGATCTTCTTTGAAGGTCTGATAGATCTCTGCACTAAACCCATC
TGATACTGGACTTTTTTTGGTTGGGAGACTATTAATGACTGCTTCTACTT
CTTTAGGGTATATAGGACTGTTTAGATCATTAACCTGATCCTGATTTAAC
TTTCTTTCCTCGTATCTGTCTGGAAGTTTGTCCATTTCATCCAGGTTTAC
CAGTTGTGTTGAGTATAGCCTTTTGAGAAGGATCTGATGGTGTTTTGGAT
TTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCACTTCTGATTTTGNTAA
AT

TTTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGTGAATGGTAATCTAGG
ATTTTTGCTTGTATGTCAAATAAGTTTTGAGAGTTTGTCTCTGAAAGGAA
TAAATGTTGTAGAATCTCTTCCTTCTGTGCATTGAATGGTGAATGGTTGG
CTCAGGACTGTTTTCACTAGACTTTAATGCTTTTCTAAAGTGATGCTTTG
AGTCTTTCAACAGTGATTTTCTTCTTACAAGGATCAGTTGTTATAAACGA
GTGATCTTTACCCCTGCCCAGTCTCTTACTTTCTCTCATTTTATGGACGT
TCTCCTCATAGGACGTGTTCTCCATGTTGTGCTGAAGCTAAGAGAGCTCT
TATCAGAGACCAGACCACCCCCTCCAGTCTTAGATCTTGGACTTTTAGAC
CTCCAAACTGTGAAGATAAAGAACCTTATTCTTTGATGAGTACCTGACTT
CAAGTATTTGTTTTATAATAGTAAAGAAAAAACAGATAACTGATGGGATG
TCCCAAGGAAGTTTAGGTTTGCTTTGCTGTAACATCTTCTGTGCATTGCT
AGTTTCCAGCAACTAGAATCAGCATTCACAATATTTCACAGTAGTTCACA
ATCACTGAAAGAGTAACAGTAACATTCTACGGTGTAAGCTCAAGAAAAGT
TTAACTGGAGCACACTAGAGAATACCAAGGGAAACAAATGCACTGAAGAG
AGTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_h16.g1 MSMg01no507_h16.g1 CHROMAT_FILE:
MSMg01no507_h16.g1 PHD_FILE: MSMg01no507_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:02 2005
         (614 letters)



>mm_chr16_28304615_28305628
          Length = 1014

 Score =  936 bits (484), Expect = 0.0
 Identities = 490/492 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggtgaatggtaatctaggatttttgcttgtatgtcaaataagttttgagagtttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agaggtgaatggtaatctaggatttttgcttgtatgtcaaataagttttgagagtttgtc 433

                                                                       
Query: 61  tctgaaaggaataaatgttgtagaatctcttccttctgtgcattgaatggtgaatggttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tctgaaaggaataaatgttgtagaatctcttccttctgtgcattgaatggtgaatggttg 373

                                                                       
Query: 121 gctcaggactgttttcactagactttaatgcttttctaaagtgatgctttgagtctttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gctcaggactgttttcactagactttaatgcttttctaaagtgatgctttgagtctttca 313

                                                                       
Query: 181 acagtgattttcttcttacaaggatcagttgttataaacgagtgatctttacccctgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acagtgattttcttcttacaaggatcagttgttataaacgagtgatctttacccctgccc 253

                                                                       
Query: 241 agtctcttactttctctcattttatggacgttctcctcataggacgtgttctccatgttg 300
           |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 252 agtctcttacttcctctcatttcatggacgttctcctcataggacgtgttctccatgttg 193

                                                                       
Query: 301 tgctgaagctaagagagctcttatcagagaccagaccaccccctccagtcttagatcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgctgaagctaagagagctcttatcagagaccagaccaccccctccagtcttagatcttg 133

                                                                       
Query: 361 gacttttagacctccaaactgtgaagataaagaaccttattctttgatgagtacctgact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gacttttagacctccaaactgtgaagataaagaaccttattctttgatgagtacctgact 73

                                                                       
Query: 421 tcaagtatttgttttataatagtaaagaaaaaacagataactgatgggatgtcccaagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  tcaagtatttgttttataatagtaaagaaaaaacagataactgatgggatgtcccaagga 13

                       
Query: 481 agtttaggtttg 492
           ||||||||||||
Sbjct: 12  agtttaggtttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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