Query= MSMg01no507_i18.b1 MSMg01no507_i18.b1 CHROMAT_FILE:
MSMg01no507_i18.b1 PHD_FILE: MSMg01no507_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:08 2005
(719 letters)
>mm_chr16_85220834_85221951
Length = 1118
Score = 1208 bits (625), Expect = 0.0
Identities = 693/718 (96%), Gaps = 11/718 (1%)
Strand = Plus / Plus
Query: 6 gaattcaaggtttatt-tcgtgggctgggaacagtagatggcaagttagattttttgttt 64
|||||||||||||||| | ||||| ||||||||||||||||||||||||| |||| ||||
Sbjct: 206 gaattcaaggtttattgt-gtgggatgggaacagtagatggcaagttaga-ttttcgttt 263
Query: 65 tttcttttagagtttataagattcgttcccttccttatcaatgcctttctgcatatcttt 124
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 264 tttcttttagagtttataagattcgttcccttccttatcaatgcctttttgaatatcttt 323
Query: 125 taaaaaaaaacaaaaaactttttattgattctttgtgaacttcacatcatgtacctcaat 184
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 t-taaaaaaac----aactttttattgattctttgcgaacttcacatcatgtacctcaat 378
Query: 185 cccattcatctccctgtccctttctatctgtccttgcaatctctcccagtataaaataaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cccattcatctccctgtccctttctatctgtccttgcaatctctcccagtataaaataaa 438
Query: 245 gtaagatagattgaaaaacaaaaacaaaaccccatcttgtcatggaagccgtagtatgtc 304
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ataagatagattaaaaaacaaaaacaaaaccccatcttgtcatggaagccgtagtatgtc 498
Query: 305 agtgtgtcactcagtatacatttctgtccacacatctttgcttttaaatgctcattgtaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtgtgtcactcagtatacatttctgtccacacatctttgcttttaaatgctcattgtaa 558
Query: 365 tgagtccagtcattgtttgctgggtttttt-gtttgtttgtttt-ttggtttttcttttg 422
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 559 tgagtccagtcattgtttgctgggtttttttgtttgtttgtttggttggtttttcttttg 618
Query: 423 ttttgttttgttttgtctctggattttgctacatgatcaatactggatcctcatggggac 482
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttttgttttgttttgcctctggattttgctacatgatcaatactggatcctcatggggac 678
Query: 483 tcctctcgaatatcctgttgatgttgctctgtgtcgtgaggatcctgcagctttagatct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcctctcgaatatcctgttgatgttgctctgtgtcgtgaggatcctgcagctttagatct 738
Query: 543 gtagaactggtcctttcacagtacagcaggttatagatgggatagatgtggtgggccaac 602
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 739 gtaggactggtcctttcacagtaccgcaggttatagatgggatagatgtggtgggccaac 798
Query: 603 tcaaagctctggatctgggcctcgctgagttggtctgaccatcagctttcctgtacc-ac 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 799 tcaaagctctggatctgggcctcgctgagttggtctgaccatcagctttcctgtacccac 858
Query: 662 acacatcangacaagctcaccaacatggctctgagtagcttacccaataccaaagctg 719
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 acacaccaggacaagctcaccaacatggctctgagtagcttacccaataccaaagctg 916
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1118
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1108
Effective search space: 785572
Effective search space used: 785572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no507_i18.g1 MSMg01no507_i18.g1 CHROMAT_FILE:
MSMg01no507_i18.g1 PHD_FILE: MSMg01no507_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:08 2005
(565 letters)
>mm_chr16_85403460_85404424
Length = 965
Score = 928 bits (480), Expect = 0.0
Identities = 486/488 (99%)
Strand = Plus / Minus
Query: 78 ctccttcctcacattttatcataaatggaatggaaagtgtctgggatatttttgagataa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 ctccttcctcacattttatcataaatggaatggaaagtgtctgggatatttttgagataa 906
Query: 138 gaaggaatataatgtgattggcatttctaaaaggtcactttgctttctgtatgtaaatca 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 gaaggaatataatgtgattggcatttctaaaaggtcactttgctttctgtatgtaaatca 846
Query: 198 gactccgggagaacaagcacggaagacaagctgtaaggctcttggtggcagtccaggcga 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 gactccgggagaacaagcacggaagacaagctgtaaggctcttggtggcagtccaggcga 786
Query: 258 tgatgacaaggtgcttagacgtagttggtccgggacctaagtggccgggtgaacagcgat 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tgatgacaaggtgcttagacgtagttggtccgggacctaagtggccgggtgaacagcgat 726
Query: 318 gtcatttactctactgcagagagttggagagaggaagtcaccctggtaatatattcatag 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gtcatttactctactgcagagagttggagagaggaagtcaccctggtaatatattcatag 666
Query: 378 gtaagagtttttcaggatgtaggccttctcttaaatcacacattttaattttcataatgg 437
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 665 gtaagagtttttcaggatgtaggccttcccttaaatcacacattttaattttcataatgg 606
Query: 438 ccataataaaattcagcccagaatgcactttttatattatccagaaatggtctgcagcag 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ccataataaaattcagcccagaatgcactttttatattatccagaaatggtctgcagcag 546
Query: 498 ggtgggtgaaatgctgagaaaatgtgaagcaaaattcagtttcctttgagccaccaagca 557
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 545 ggtgggtgaaatgctgagaaaatgcgaagcaaaattcagtttcctttgagccaccaagca 486
Query: 558 tcttagag 565
||||||||
Sbjct: 485 tcttagag 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
