BAC Information

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BAC

Clone NameMSMg01-509C18
Chromosome16 (Build37)
Map Location 97,795,146 - 97,795,722
singlet/doubletsinglet
Overlap geneTmprss2
Upstream geneDscam, Bace2, Mx1, ORF9, EG668559, LOC100041436, Mx2
Downstream geneRipk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509C18.T7 (MSMg01no509_c18.b1)MSMg01-509C18.TJ (MSMg01no509_c18.g1)
ACCAG582912AG582913
length777763
length of high quality
(start - end)
651 (69 - 719)577 (74 - 650)
definitionCHROMAT_FILE: MSMg01no509_c18.b1 PHD_FILE: MSMg01no509_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:20 2005CHROMAT_FILE: MSMg01no509_c18.g1 PHD_FILE: MSMg01no509_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAGTTTCCTGGTACACCTGCGCAACTCTCAAGATGTTTGTGGCT
TATACGAGGAAGTCAGGTGCAAGTCATACGACTTAGCTGCAGTCCCTGGC
GCCTTTGGGACTGCCGCCATACCCGCTCCTCACATCTCCCCCTTTTTTCT
TTTTTGGCAGAGAGAATGTCTGTAGATAGCCCCCCGCAGCCATGCCCCTT
ACCCGTCCTTGGGAGACAAACAGCATTGGTTTGATCCCTGTCTTAGGTTG
GTGACATGCCCAGGGAGTCTTATCACTGACTACCTCTCTATCATGCCAAG
CCACACCTGGGGAGATTGTGTTTTGCTTGCGGCAGGTGCATCAAAAGGCC
AGGATGTTGATTAATCTATGGCCAGATCTTAATTGCTGCAAGCAAGCCTC
ATGGGTGAAGGTAGAGGTCTGATCCCCAATGTGCAAGCATAGGGGCCCTA
CACAAAACCATCCCTTGGGCTCATCACCCAGAGAGGTCTTGGCCAGCTCC
CGTGTTGTTTTTCCTGGGGGAAGGGAACTAGGACACTGAACCTTCATGCA
ATCAGACGTGCCTTCCATAAGATGCCAACAGCAAGCTATCCTCTGTGCAG
TGCTTAGCCTCGCACCCCACGGTATAACGCAGCATAATTTCTTTTAGAGC
GGCAAATCGAATCTGAGGAGATTGTCCCGCCTTCACTGCAGCAAAAGCCT
ACACTACCATGGCTGAAAGTGCGGGCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAACCTTGGTACCCACTAGGAAACCAA
GGATTTTGGCTTGGTGGCAAGGGCAACTCAGGTTTTACTTCTGTCCATGT
ATAACTTAAAATTATTCTCTAGTTTGGGTGTCATGACAAATTTCAGTGTT
AGAGTGTCTGAGGCAGGAGGATCACCAGTTCAGAGCCAGCCTGGGTTATA
CAGCAAGACCCTGTTACAAACAAATGAGCAGCCATCCATTAGTGTTATCA
GGAAGTTGTCTGGAAACTTCTGATTTCCCTGGAGGGCTTTACATGTAAAC
CACAGATCACAACATAACCAACACCTTGGCAGGGATAGAAAAAAAATAAA
GTCACTCAGTTGGGTGTCAAACTTCCCACGTTGTGCATGAGAAGGAAGAA
TCATTGAGTTCTGTCCTATAGACACTGTCCCTGGTGCACTTAAGAGGCCA
GAGCATGCTCTGACGGCATCAACTGCCAGCTGTGATTCTGTGGGTAACGG
TTGATTTCCCACACATCAGTGTTCCACCAGGCCACTTGGACAGATAGAGG
CTCACATTCACGAGCCCACTTCACTGTCACCTATACACACACTGAATAGG
GACCTTTCCAAATCCCCAAATAAGGATCTCCAGTCACCTGACCTGGCTAC
CTTGTGCTTTCACCCAGGTACCATGTAGGAAGCCTCAAAAGGGGAACAAT
GGAAAGAGGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_c18.g1 MSMg01no509_c18.g1 CHROMAT_FILE:
MSMg01no509_c18.g1 PHD_FILE: MSMg01no509_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:20 2005
         (577 letters)



>mm_chr16_97794946_97795922
          Length = 977

 Score = 1077 bits (557), Expect = 0.0
 Identities = 572/577 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccttggtacccactaggaaaccaaggattttggcttggtggcaagggcaactcaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aaaccttggtacccactaggaaaccaaggattttggcttggtggcgagggcaactcaggt 260

                                                                       
Query: 61  tttacttctgtccatgtataacttaaaattattctctagtttgggtgtcatgacaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacttctgtccatgtataacttaaaattattctctagtttgggtgtcatgacaaattt 320

                                                                       
Query: 121 cagtgttagagtgtctgaggcaggaggatcaccagttcagagccagcctgggttatacag 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 cagtgttagagtgtctgaggcaggaggatcaccagttcagagctagcctgggttatacag 380

                                                                       
Query: 181 caagaccctgttacaaacaaatgagcagccatccattagtgttatcaggaagttgtctgg 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 caagaccctgttacaaacaaatgagcagccatccattagtgtcatcaggaagttgtctgg 440

                                                                       
Query: 241 aaacttctgatttccctggagggctttacatgtaaaccacagatcacaacataaccaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacttctgatttccctggagggctttacatgtaaaccacagatcacaacataaccaaca 500

                                                                       
Query: 301 ccttggcagggatagaaaaaaaataaagtcactcagttgggtgtcaaacttcccacgttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttggcagggatagaaaaaaaataaagtcactcagttgggtgtcaaacttcccacgttg 560

                                                                       
Query: 361 tgcatgagaaggaagaatcattgagttctgtcctatagacactgtccctggtgcacttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcatgagaaggaagaatcattgagttctgtcctatagacactgtccctggtgcacttaa 620

                                                                       
Query: 421 gaggccagagcatgctctgacggcatcaactgccagctgtgattctgtgggtaacggttg 480
           |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gaggccagagcatgctctgatggcatcaactgccagctgtgattctgtggataacggttg 680

                                                                       
Query: 481 atttcccacacatcagtgttccaccaggccacttggacagatagaggctcacattcacga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttcccacacatcagtgttccaccaggccacttggacagatagaggctcacattcacga 740

                                                
Query: 541 gcccacttcactgtcacctatacacacactgaatagg 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcccacttcactgtcacctatacacacactgaatagg 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)