BAC Information

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BAC

Clone NameMSMg01-509J19
Chromosome16 (Build37)
Map Location 29,574,750 - 29,575,110
singlet/doubletsinglet
Overlap genenone
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4
Downstream geneOpa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509J19.T7 (MSMg01no509_j19.b1)MSMg01-509J19.TJ (MSMg01no509_j19.g1)
ACCAG583247AG583248
length768783
length of high quality
(start - end)
360 (43 - 402)532 (72 - 603)
definitionCHROMAT_FILE: MSMg01no509_j19.b1 PHD_FILE: MSMg01no509_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:54 2005CHROMAT_FILE: MSMg01no509_j19.g1 PHD_FILE: MSMg01no509_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTGTACACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTG
CCTCCCAACCTCTCTCTACCTCTGCTGGGATTAAAGGTATGCGCCACCAC
GCCCAGCTGAATTTACATTTTTTATGGTATTACTTTTTGTGGCTTAAGAA
CTGTTTGACTATTCACAGGTTACTAATAGGTTTTCTAACATTGTTTCATT
CTTCAATTCTTTTATTCTTGCTTTTATACTTACAATTATATCCCAGATAA
TATCATTTTTGTGCTTACGTACTAATTTTGTATATGGTGTGAATATATTC
TGGATATTGCAAGCAGTGGGGGGGGTATTTTTTTCCCACAGGGATCTTCA
TTTATTCCATTACCATTCAGAGAACAAAAGGAAATAATTCCTTCTCCATT
AAATTGCTTTGGTGTTTTTTGGCATAAACCCATTACCAGTGTGCATAGTC
GCTTTGGGCTGTTACGGAAATGCATGAGATTTATTTTATCTTGGGATTTC
CATGGGCTTAGCTTTCACAACATGGTGTCTGGAGCATGTGGCGCTGATGC
TCCGGAAACAGAACAGAGCAGTAACAGGGAGGGGACAGAGCAAGGACAAC
CCCCGTGATCCTACATTCCTTACCTGGGGCACATCTTTTCCAGGAACCCG
CCCCCCCCCCCAGCTTTTCTTCTAATTCTTGAACCATCAAGAGCTTAAAC
TTTTCTTTAAGACAGACN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTACCAACATTCTCACAGTGTGTTGTA
GTTAGGGTTCCACTGCTGTGAACAGACACCATGACCAAGGCAACTCTTAT
AAGGACAACATTTAATTGGGGCTGGTTTATAGGTTCAGAGGTTCAGTCCA
TTATCATCAAAGCAGGAGCATGGCATCATCCAGGCAGGCGTGGTGCAGGA
GGAACTGAGAGTTCTGCATCTTCATCTGAAGGCTGCTAGCAGAATACTGG
CTTCCAGGCAGCTATTATGAGGGTATTAAAGCCCACACCCACAATGACAC
ACCTACTCCAACAGGGCCACACCTTCTAATAGTGCCACTCCCTGGGCTGA
GCATATACAAACCATAACACAATATAACGCTGTCAAATCTTGATTTGTTT
AAACAGCTCATAATACATTTTATAAAATCATTATGAAATTTATCTCTTGT
ACCATTATCTTAAAAGTAAAGTTGAAAGCTAGGCATGGTGACGCACACCT
TTAAACTCAGCACTCGGGTGGCAGAGGAAGGCAGATTTCTGAGTTCAAGA
CCAGTTGGTCCTACAGAGTGAGTTCCANGANANCCAGTGCTACTCATATG
ATCCCTGTCTTCAAAAAAAAGATGAAATTTCTCTCCTTCGTTCTTTCTTT
CCCTCTTTCTTTCTTTCTTTCTTTCAGTCTTTCCATTCTTACGTTCTTCC
TTTACATTACTTAATTTATTTTTTTGAGACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_j19.b1 MSMg01no509_j19.b1 CHROMAT_FILE:
MSMg01no509_j19.b1 PHD_FILE: MSMg01no509_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:54 2005
         (360 letters)



>mm_chr16_29574547_29575310
          Length = 764

 Score =  663 bits (343), Expect = 0.0
 Identities = 355/361 (98%), Gaps = 4/361 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtacaccaggctggcctcaaactcagaaatccacctgcctctgcctcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagaccaggctggcctcaaactcagaaatccacctgcctctgcctcc 263

                                                                       
Query: 64  caacctctctctacctctgctgggattaaaggtatgcgccaccacgcccagctgaattta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caacctctctctacctctgctgggattaaaggtatgcgccaccacgcccagctgaattta 323

                                                                       
Query: 124 cattttttatggtattactttttgtggcttaagaactgtttgactattcacaggttacta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cattttttatggtattactttttgtggcttaagaactgtttgactattcacaggttacta 383

                                                                       
Query: 184 ataggttttctaacattgtttcattcttcaattcttttattcttgcttttatacttacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataggttttctaacattgtttcattcttcaattcttttattcttgcttttatacttacaa 443

                                                                       
Query: 244 ttatatcccagataatatcatttttgtgcttacgtactaattttgtatatggtgtgaata 303
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 444 ttatatcccagataatatcatttttgtgcatacgtactaattttgtatatggtgtgaata 503

                                                                       
Query: 304 tattctggatattgcaagcagtgggggggg----tatttttttcccacagggatcttcat 359
           ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||
Sbjct: 504 tattctggatattgcaagcagtggggggggggagtatttttttcccacagggatcttcat 563

            
Query: 360 t 360
           |
Sbjct: 564 t 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 764
Length adjustment: 9
Effective length of query: 351
Effective length of database: 755
Effective search space:   265005
Effective search space used:   265005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)