Query= MSMg01no509_l09.b1 MSMg01no509_l09.b1 CHROMAT_FILE:
MSMg01no509_l09.b1 PHD_FILE: MSMg01no509_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:02 2005
(670 letters)
>mm_chr16_67084569_67085638
Length = 1070
Score = 1176 bits (608), Expect = 0.0
Identities = 657/684 (96%), Gaps = 19/684 (2%)
Strand = Plus / Minus
Query: 1 ttcttgtttattttgctcacctttaatttattgctgaggatattgaacataaattttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ttcttgtttattttgctcacctttaatttattgctgaggatattgaacataaattttcag 725
Query: 61 taattggagtggtcttagataatttgaacataatatcttttacaatatttaaaaaaatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 taattggagtggtcttagataatttgaacataatatcttttacaatatttaaaaaaatac 665
Query: 121 tgattttttaaaaataatttcagtccaatgaatttatattgtatatgaatttattagagg 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 664 tgattttttaaaaacaatttcagtccaatgaatttatattgtatatgaatttattagcgg 605
Query: 181 taactaatatttatatttgaaagtttaaaaaacattccaaaatactgtttcactcttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taactaatatttatatttgaaagtttaaaaaacattccaaaatactgtttcactcttcag 545
Query: 241 -----attttttagaaaacaaccaataccttccttattaaaaaataatgtatctgtgctc 295
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 accaaa-----tagaaaacaaccaataccttccttattaaaaaataatgtatctgtgctc 490
Query: 296 aaatatatttaacatctctttaggtaggacacagtgattaaaacttcaatttaaagaata 355
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aaatatacttaacatctctttaggtaggacacagtgattaaaacttcaatttaaagaata 430
Query: 356 aaatgaaccatttttcttctgccaacagtgttaaatgtagacatataataattagagtca 415
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 429 aaatgaaccatttttcttctgccaacagtgttaaatgtagacatataagaattagagtaa 370
Query: 416 aactttcttgggaagactagctgtatcaa---------aacaacaacaacaacaacaaca 466
||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 369 aactttcttgggaagactagctgtatcaaaacaacaacaacaacaacaacaacaacaaca 310
Query: 467 acaacagatgttgtttgatgagtacaatgttatgaagtaggagaatgaagactccttggt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acaacagatgttgtttgatgagtacaatgttatgaagtaggagaatgaagactccttggt 250
Query: 527 ggctaaagcgagctttaagataacaaatcactaatagcaggattccctgacttctttgta 586
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 249 ggctaaagcaagctttaagataacaaatcattaatagcaggattccctgacctctttgta 190
Query: 587 tttacaaaactatgggaaacaaccctatgttaaattgtctttaacttagcaaggaactgc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tttacaaaactatgggaaacaaccctatgttaaattgtctttaacttagcaaggaactgc 130
Query: 647 actgaaagctgcagtacttgagag 670
||||||||||||||||||||||||
Sbjct: 129 actgaaagctgcagtacttgagag 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_l09.g1 MSMg01no509_l09.g1 CHROMAT_FILE:
MSMg01no509_l09.g1 PHD_FILE: MSMg01no509_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:02 2005
(673 letters)
>mm_chr16_66900746_66901819
Length = 1074
Score = 1156 bits (598), Expect = 0.0
Identities = 656/678 (96%), Gaps = 9/678 (1%)
Strand = Plus / Plus
Query: 1 ttgacatgtaatgtacaaccttgcctttttaaaattagattgtatagcctcagagcacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgacatgtaatgtacaaccttgcctttttaaaattagattgtatagcctcagagcacag 260
Query: 61 gaaatattgactcatatggcagcgtcgataagcatcaaatgtccctgcagacttgggcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatattgactcatatggcagcgtcgataagcatcaaatgtccctgcagacttgggcta 320
Query: 121 gcaagctgcttgtgaatccagcagatgtttctactgtctgggccaataggaatcttatgg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gcaagctgcttgtgaatccagcagatgtttctactgtctgggccaataggaaccttatgg 380
Query: 181 acctttcccccttcattttctcccaggagcaaatgttgacacagcagaaatttggatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctttcccccttcattttctcccaggagcaaatgttgacacagcagaaatttggatgca 440
Query: 241 tgtcttatgagaaacagaagggtcgatgagaaagtagggtacgctcttttccataaatag 300
|| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tgccaaatgagaaacagaagggtcgatgagaaagaagggtacgctcttttccataaatag 500
Query: 301 tggtcatcagtggtttgaattgactattaagccatccccaatggtttatatttgtgcatt 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 tggtcatcagtggtttgaattgactattaagccatctttaatggtttatatttgtgcatt 560
Query: 361 tgctacttcatttagcaaatttgtacaatttttgtccttttttgatagcacttatccaag 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctacttcatttagcaaatttgtataatttttgtccttttttgatagcacttatccaag 620
Query: 421 ctttataaagccaatctttgaatacagtagtggtttcaaaatataaacaaataaacaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ctttataaagccaatctttgaatacagtagtggtttcaaaatataaacaaataaa---aa 677
Query: 481 aaattgagtatataaaataagaaaacagtttacttatggtatttttt---cataaaattg 537
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 678 aaattgagtatataaaataagaaaacagtttacttatggtgtttttttttcataaaattg 737
Query: 538 aaaaaaaag-tgcctaaccattcatttgtagtgaatatatcaagactttatgtacacttc 596
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 738 aaaaaaaaggtgcctaaccattcatttgtagtgaatatatcaagactttatgtacacatc 797
Query: 597 attaatgtaacagtattagacccagaattttgtaaatctagaatttttttagaaataagt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 attaatgtaacagtattagacccagaattttgtaaatctagaatttttttagaaataagt 857
Query: 657 ttagtcat-tacccatta 673
|||||||| | |||||||
Sbjct: 858 ttagtcatct-cccatta 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1074
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1064
Effective search space: 705432
Effective search space used: 705432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
