BAC Information

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BAC

Clone NameMSMg01-510J15
Chromosome16 (Build37)
Map Location 29,192,412 - 29,193,083
singlet/doubletsinglet
Overlap genenone
Upstream geneFgf12, 1600021P15Rik, EG666717
Downstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510J15.T7 (MSMg01no510_j15.b1)MSMg01-510J15.TJ (MSMg01no510_j15.g1)
ACCAG584000AG584001
length1,272749
length of high quality
(start - end)
---673 (75 - 747)
definitionCHROMAT_FILE: MSMg01no510_j15.b1 PHD_FILE: MSMg01no510_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:14 2005CHROMAT_FILE: MSMg01no510_j15.g1 PHD_FILE: MSMg01no510_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATCACAATACCTATATTATAGAGACAGGTAAGGACGCAGAACATTTTT
CCCCAAACATCAGGGTGGGAGTCTGTGCGTTTGTTCTCCCTCCCATACTG
AAGAACAGAAGAGCGAAGAGAATTGCTACGCTTGAATTCGTGCATCTATA
CGCTACGATCCGGCCAGCCCCTGCACAGTCAGAACTAAACCAGACAGCGG
ACAATGACGCCGCAACTCGACAGCGCTGCCGACATACGAGCGTAGTACGA
GCGATGCGATATACCGAANCCGTGATACCGAGAGAACAGAGGAAGGCCAC
CGCGTCATAGAGACCGCGCGATACGCGAGAGTGCGCGAGACAAGGACCGT
CAGGGACAGCAGGTACTGTGTGTGCCCAGCAGCCATTCTGATGTTGTGAG
TGCGAGAGTGAGAATCGGCATATACCGTGTATGCAGACCCATATACGAGT
GGCGTGCTCTGTGATCCGCCGCGCGGCTTTTTTCGTCGCCGATGTTGTTC
CCCTCCTCTGCTATGATACGCCTCCCTTACTGTTTCCCCGTTTACTCCCC
TTGTACTCCGCGCCATATCCCGTTTCCCTCCCCCGCCTCACCTCCATCGT
TATATTGCTCTTATCTACGCGAGATAGTCCTTTCGATTATAGCGCCCGCC
CCATTTTTACCCATCTCTTACCACGCATTCCGCTGCCCCACCGCGCCATT
TATACCCGGTTAGCCCGCCCTTATGCCGATGGAGTGTGCACGTGACCCAT
GCCGCTATCACCCACGCCATTATATATTTACTCGAGTCTCACTGTTTCGC
GCCGAATGCCTTGTTACGCCGCTTGTACTACATTTCCTGACGACTTATCT
CATAGTGCGATACCCGCGCCAGATCCGCACATATATTACCGTCCGTCCAA
GCGCACTCGCGTGATATCCCACATCGCACGCGTACGCGAATATTTACCCC
GCCTCGCGGCCCGATCCCGCGCGCGTTACGGTATTATCCGGCCGTTGTGC
CGCTCATGATTCACGCTTAGCCAGAGTAGCCGCGCCGCGTTTTAGCGCCG
CCGCGTTGTAGATTGGCGTGTATTCCACCTACCACCGTATATTTATTATT
AGCACGTTGCCGTGCCTCGCCATTTAGACCGCACCTGTCACTATATCCCC
TGTACCTCTTCGCGCGCGCCGCTCGTACANCGGTCCACTCGTCTGTGTCT
TGCGCGAATTATGCCCCGCATATATCCGCGGGCCTTATATATATTGATAT
GCACCTGTGTGTGCTGGTGTGG
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCTGGGGCTGTAAAGCTGGAAGTC
TATGCAGCCCAATTCAGAGCCTTTTCCCCTGCTGTTTGGCTGACCTTAGT
GAATTCGGTGACTGTGAAGAACGCAAAATCTTTACAAAGTAGCAGGTTTA
CCAGGACCGGTAGAGGGCAGCTTTATTCACACCTTAGCCTGAGAGAGCTG
CTGTTTTAGACAAGTGTACTCTTCAAGAAGTTCAAGTGAAGAATACAGCA
TGAGACATATTTCAATACTCATANTAAAGGCCAACTGGGACCCAGGACTC
TGGACTCTTTCTGGGTAGTCCTCTCTCAAAGGATACTGAGCCATAGCAGT
CACTGGTAGCACTTGGATGTGTGTCTATCCGTATCCTGAACTGAACGGTG
ACCCAAGGCCAAATAAAAGCTCTATTATAAGTATCATTGTGTACCTATCT
GCTGACTGACTTTGGGTTTCCTCATTGTAACCCCTGAGAACTGGGGAAAT
TCTCCATCATTAGATATGCAGTAGGGCCAATAGTCTGTACATGATGATGA
GTTTATGTGGGCCAAAGGCATTAAAAAAACCTGGTGGAATAATGGCAAGG
AAAATTACAATGGAGAATAAGCATGATTTCAGCTAATTATTATTATTAAG
AATTATTACTGCCGTCACTGTGTATGAGGCACAATGTTTGAGGATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_j15.g1 MSMg01no510_j15.g1 CHROMAT_FILE:
MSMg01no510_j15.g1 PHD_FILE: MSMg01no510_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:14 2005
         (673 letters)



>mm_chr16_29192212_29193283
          Length = 1072

 Score = 1218 bits (630), Expect = 0.0
 Identities = 663/674 (98%), Gaps = 3/674 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctggggctgtaaagctggaagtctatgcagcccaattcagagccttttcccctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 aggctggggctgtaaagctggaagtctatgcagcccaattcagagccttttcccctgctg 813

                                                                       
Query: 61  tttggctgaccttagtgaattcggtgactgtgaagaacgcaaaatctttacaaagtagca 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 812 tttggctgaccttagtgaattcggtgactgtgaagaacgcaaaaactttacaaagtagca 753

                                                                       
Query: 121 ggtttaccaggaccggtagagggcagctttattcacaccttagcctgagagagctgctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 752 ggtttaccaggaccggtagagggcagctttattcacaccttagcctgagagagctgcagt 693

                                                                       
Query: 181 tttagacaagtgtactcttcaagaagttcaagtgaagaatacagcatgagacatatttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tttagacaagtgtactcttcaagaagttcaagtgaagaatacagcatgagacatatttca 633

                                                                       
Query: 241 atactcatant-aaaggccaactgggacccaggactctggactctttctgggtagtcctc 299
           ||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 632 atactcaga-tgaaaggccaactgggacccaggactctggaccctttctgggtagtcctc 574

                                                                       
Query: 300 tctcaaaggatactgagccatagcagtcactggtagcacttggatgtgtgtctatccgta 359
           ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 573 tctcaaaggatactgagccatagtagtcactggtagcacttggatatgtgtctatccgta 514

                                                                       
Query: 360 tcctgaactgaacggtgacccaaggccaaataaaagctctattataagtatcattgtgta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcctgaactgaacggtgacccaaggccaaataaaagctctattataagtatcattgtgta 454

                                                                       
Query: 420 cctatctgctgactgactttgggtttcctcattgtaacccctgagaactggggaaattct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cctatctgctgactgactttgggtttcctcattgtaacccctgagaactggggaaattct 394

                                                                       
Query: 480 ccatcattagatatgcagtagggccaatagtctgtacatgatgatgagtttatgtgggcc 539
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 393 ccatcattagatatgcagtagggctaatagtctgtacatgatgatgagtttatgtgggcc 334

                                                                       
Query: 540 aaaggcattaaaaaaacctggtggaataatggcaaggaaaattacaatggagaataagca 599
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaaggcatt-aaaaaacctggtggaataatggcaaggaaaattacaatggagaataagca 275

                                                                       
Query: 600 tgatttcagctaattattattattaagaattattactgccgtcactgtgtatgaggcaca 659
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 274 tgatttcagctaattattattattaagaattattactgcagtcactgtgtatgaggcaca 215

                         
Query: 660 atgtttgaggattt 673
           ||||||||||||||
Sbjct: 214 atgtttgaggattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1072
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1062
Effective search space:   704106
Effective search space used:   704106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)