BAC Information

Click to search

BAC

Clone NameMSMg01-510M19
Chromosome16 (Build37)
Map Location 59,491,127 - 59,491,559
singlet/doubletsinglet
Overlap geneMina
Upstream geneSt3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803
Downstream geneBC043118, LOC672884, Arl6, Epha6, LOC100043804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510M19.T7 (MSMg01no510_m19.b1)MSMg01-510M19.TJ (MSMg01no510_m19.g1)
ACCAG584151AG584152
length723758
length of high quality
(start - end)
53 (227 - 279)433 (326 - 758)
definitionCHROMAT_FILE: MSMg01no510_m19.b1 PHD_FILE: MSMg01no510_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:28 2005CHROMAT_FILE: MSMg01no510_m19.g1 PHD_FILE: MSMg01no510_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATAATTGCGGCGCAAACGACTCACATTTCCTACTGCGCGGAANCCNTC
ATATCANCACCGACGCAAGNCCAAAAACGGCAGCTNCCNAACGGCAGAAA
ACCGCATGGCAGCCGAACTACNAACTGGGAAAACGGNAAAGAACTCCCAC
AGNANGCAACAAGNGACATGAAGAGATGAACTNNNCAANACAAGCTTGTC
ATGCACTCATTCATTGAGGATTATGATGGGGGAAATGGCTAGTTTGAAGT
CAAAAAAAAAAAAGTAAAATAAATAAAATAAAATGTTTTTCTTTAATTGN
NGCACCNGNAGCCGGCCGGGAACAATGCAATTGATCGGAAAAGTGTCTAT
CTAATAAACTTTCAACTAGCACAAATTATTTCTATTGCCACAAACTCCAA
GTTGATTTTAAGAACGGCAACTATCAAACTCTCTGATCCACAAACTCATG
TCTGGTGTTAGTCAATATCCGGGACAACAGACAGCTAAGAACTAGGGACA
GGGTCACACTTCCTTTGCCAAATAATGTTTCTGTTTTTAAAAACTGACTG
GTTTTGACCAGTTTCCCTCTCCTGCCTGACAACTGCATTCTGCAGGGCTC
GTTCGCTCTCAAGCCTACTTGATTCTAGGAAAGGCTCTGTGAAATGGGAG
TACCATATCAAAGTAGATCCTTTCCCTGCCTCACGCCGCCCCACGACGAT
GGCGGTCCACCTCAAAAATTGTC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCGAAAACAAGGCCAGCCTGCTCTACATAGACAGTT
CAGAGCCAACCAGAGCCTGCTTTCTCCCTCACACTCCCCCACAAGATTTT
CCTTGGCGTTATAGTTTTTAATCCTCCTAATACTGAAGCCCTCAGTATTT
TTGTTGATAATTTAATATTTTCTTTAAAGGATGAAGCTCAACAAAAGGTG
GTTTACATCTATCATTCTCTGAAGAATGTGAGGCAGATGCACATGATAGG
AAAAGAGGAGGAATCCGATTTTTTTTCCAGCTGAAAAATGTCTTTCCTAG
AGTTTGGGTTGTGGCTGGGACAATTACTTTTGACTGAAAGGTCATGTGTC
TTTACAGAAGCATTGTGGACCTGCCATTTTACTTGACTGATAGGACAATT
ACATCAGTCAATACTGTGAAGGATGTATTGATAGCAGCTTTAAAACACAA
TAGCTGTGACCTTATAGAAAGTGTGATAAAGGCCATACATTCTGCAGCAA
CTTAACTACTCAAAGTCGGTTGTTGGAGTCTGAGCTTTTTATGTGGGGAA
TTGATGACTTTTGTGAGTTATCTAGTTACAGCTGAAGTAGTTTCTCTGAA
ACAAGTTTCCTACTTCTGACGGATATTAAAAATACATACATTGAGAATTG
TGTAAGCTTGTGCAAAATCCATGAAGTGACTTTATTTTTGTACTAAACAA
TGTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_m19.g1 MSMg01no510_m19.g1 CHROMAT_FILE:
MSMg01no510_m19.g1 PHD_FILE: MSMg01no510_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:28 2005
         (433 letters)



>mm_chr16_59490927_59491759
          Length = 833

 Score =  837 bits (433), Expect = 0.0
 Identities = 433/433 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagctgaaaaatgtctttcctagagtttgggttgtggctgggacaattacttttgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccagctgaaaaatgtctttcctagagtttgggttgtggctgggacaattacttttgact 260

                                                                       
Query: 61  gaaaggtcatgtgtctttacagaagcattgtggacctgccattttacttgactgatagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaggtcatgtgtctttacagaagcattgtggacctgccattttacttgactgatagga 320

                                                                       
Query: 121 caattacatcagtcaatactgtgaaggatgtattgatagcagctttaaaacacaatagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattacatcagtcaatactgtgaaggatgtattgatagcagctttaaaacacaatagct 380

                                                                       
Query: 181 gtgaccttatagaaagtgtgataaaggccatacattctgcagcaacttaactactcaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaccttatagaaagtgtgataaaggccatacattctgcagcaacttaactactcaaag 440

                                                                       
Query: 241 tcggttgttggagtctgagctttttatgtggggaattgatgacttttgtgagttatctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcggttgttggagtctgagctttttatgtggggaattgatgacttttgtgagttatctag 500

                                                                       
Query: 301 ttacagctgaagtagtttctctgaaacaagtttcctacttctgacggatattaaaaatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacagctgaagtagtttctctgaaacaagtttcctacttctgacggatattaaaaatac 560

                                                                       
Query: 361 atacattgagaattgtgtaagcttgtgcaaaatccatgaagtgactttatttttgtacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atacattgagaattgtgtaagcttgtgcaaaatccatgaagtgactttatttttgtacta 620

                        
Query: 421 aacaatgtctcct 433
           |||||||||||||
Sbjct: 621 aacaatgtctcct 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)