BAC Information

Click to search

BAC

Clone NameMSMg01-510P04
Chromosome16 (Build37)
Map Location 7,609,644 - 7,609,827
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510P04.T7 (MSMg01no510_p04.b1)MSMg01-510P04.TJ (MSMg01no510_p04.g1)
ACCAG584263AG584264
length725725
length of high quality
(start - end)
185 (122 - 306)647 (75 - 721)
definitionCHROMAT_FILE: MSMg01no510_p04.b1 PHD_FILE: MSMg01no510_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:39 2005CHROMAT_FILE: MSMg01no510_p04.g1 PHD_FILE: MSMg01no510_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCAACCAAAAATTGCGGCGCGAAAAGAATACCAAGTGGTCATTTGCGCG
GAANCNCAANATTAACTNTACGCGGGGAAAGNNGCAAGAAAACACCANGG
GAAAAAAAANNGGTATTTGCAATGCATAGATCTGTTGAGCAATGGAGGGA
ACTTTTTGGTGTTTTTTTTTTCTTTCTTTCTTTCTTTTTTTTTTTATAAG
AACACTAAACAGTGTTAAATTAGTAATGGGTTGAATACATTTCTTATTTT
TGTTGTGGCCATTGTGCTCAGAAACACCATTTGCAATAAATTGAGTCCCA
TTTGCATGCATGTTTTTTTTTTTGAAACNGACCGNACNCNGAAAACCCNA
AGGCACTTCTGGGAACGCAGGNNAAGGCCAGCGGCCGNNNAGAANGAGGC
CNGGGNCNCAGAGCCCGCAGNNGNAGNAAGACNNANGCAGCCNNNNCACC
CAGGCAAGGACGAAGGGAGAANNACATACACCCGGCCACAAGAAGAAANA
CACCCNNCAGGGCNCNGCAGGAAACAAAAGGGAGCANGGACAGNCATACA
AGGAAAGCGGACAAAGCCCATACGGTCAACATTTTTTGTTGTTGTTTACA
AAGGGAAAATGTATAATATAATACTTTTCTTGAGTAAGGGCAAAAATTGT
ATGTTGTCTCTCATGTGTAAATATATATAATATATGATATATGTGACATG
AAACCTGAAAGGTGACTAAGAGGAC
CTCTCGATGATGTGAGAGGCCGGGCGGCGCCTGGTTCAAACATGGGGTGA
ACTATAGAAGTACCACAAAAATTCAATACTATATTGAATAGGTAGGGAGA
AAGTGGACAGACTTGTCTAGTCCCTGACTTTAGTGGGATTGTTTCCAGTT
TCTCACCATTTAGTTTGATGTTGGCTACTGGTTTGCTGTATATTTCTTTT
ATTATGTCTAGATATGGGCCTTCAATTCCTGATTTTTCCAAGACTTTTAT
CATGAATGGGTGTTGGACATTATCGAATGCTTTCTCAGGATCTAATGAGA
TGATCATGTGTTTTTTGNTTTTTAGTTTGTTTATATAGTGGATTATGTTG
ATGGATTTCTGTACATTAAACCATCCCTACATCCCTGGGATGAAGCCTAC
TTGATCATGATGGGTGATCATTTTGATGTGTTTTTGGATTCAGTTTGTGC
GAATTTTACTGAGTATTTTTGCATCGATATTCATAAGAGAAACTGTTCTG
AGGTTGTTTTTCTTTGTTGGGTCTTTGTGTAGCTTCAGTATCAGAGTAAT
TGTGGCTTCATAGAATGAATTGGGTAGAGTAACTTCTGTTTCTATTTTGT
GGAATAGTTTGAGGAGTACCGAAATTAGGTCTTCTTTGATGGTCTGATAG
TACTCTGCACTAAACCCATCTTGGTCTTGGGCTTTTTTATTTTTTTGATT
AGAGACTAGCAATGAATGTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_p04.b1 MSMg01no510_p04.b1 CHROMAT_FILE:
MSMg01no510_p04.b1 PHD_FILE: MSMg01no510_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:39 2005
         (185 letters)



>mm_chr16_7609445_7610029
          Length = 585

 Score =  333 bits (172), Expect = 5e-96
 Identities = 181/184 (98%), Gaps = 1/184 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatagatctgttgagcaatggagggaactttttggtgttttttttttctttctttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atgcatagatctgttgagcaatggagggaactttttggtgttttttttttctttctttct 259

                                                                       
Query: 61  ttcttttttttttt-ataagaacactaaacagtgttaaattagtaatgggttgaatacat 119
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttcttttttttttttataagaacactaaacagtgttaaattagtaatgggttgaatacat 319

                                                                       
Query: 120 ttcttatttttgttgtggccattgtgctcagaaacaccatttgcaataaattgagtccca 179
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcttaattatgttgtggccattgtgctcagaaacaccatttgcaataaattgagtccca 379

               
Query: 180 tttg 183
           ||||
Sbjct: 380 tttg 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)