Query= MSMg01no513_n13.b1 MSMg01no513_n13.b1 CHROMAT_FILE:
MSMg01no513_n13.b1 PHD_FILE: MSMg01no513_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:30 2005
(624 letters)
>mm_chr16_9961349_9962374
Length = 1026
Score = 886 bits (458), Expect = 0.0
Identities = 492/506 (97%), Gaps = 6/506 (1%)
Strand = Plus / Minus
Query: 5 gaattccattgtcttactgaacattccaggagaaagaatatgctttggattggagaagat 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaattccattggcttactgaacattccaggagaaagaatatgctttggattggagaagat 447
Query: 65 gaaagaccgtatttgccattgtctacataatgagctatgacagaaaacttcactgggctg 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 gaaagaccgtatttgccattgtctacataatgagctatgacagaaaaattcactgggctg 387
Query: 125 ggggtcagggagaactaggagtcttgacagagataatccactca--ctgtgagtttggct 182
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 386 ggggtcagggagaactaggagtcttgacggagataatccactcactctgtgagtttggct 327
Query: 183 gtatctttcctggagctcgatcaccacatctatgaagtagatttgtactgagtcatttag 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 326 gtatctttcctggagctcgatcaccacatctatgaagcagatttgtactgagtcattcag 267
Query: 243 gaatcccttgcttttccttcctcagacacttttaaaaaattatcattttgctttttgctc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaatcccttgcttttccttcctcagacacttttaaaaaattatcattttgctttttgctc 207
Query: 303 tttatgttatggtatgccagggtatgctatggtatgctgtgctatgatatggtatggtat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tttatgttatggtatgccagggtatgctatggtatgctgtgctatgatatggtatggtat 147
Query: 363 gtat----ttatcagcaaaacaagataagtaaaaatctcttgtatcataaaacattcatc 418
|||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 146 gtatgtatttatcagcaaaacaagataagtaaaaatctcttgtattataaaaaattcatc 87
Query: 419 aacatgtaattgtcatgtagagatgccagatcaacaggactacagtagctggtgtagcat 478
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 aacatgtaattgtcatggagagatgccagatcaacaggactacagtagctggtgtagcat 27
Query: 479 tgaattaagtctgttatatccaaagc 504
||||||||||||||||||||||||||
Sbjct: 26 tgaattaagtctgttatatccaaagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1026
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1016
Effective search space: 623824
Effective search space used: 623824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_n13.g1 MSMg01no513_n13.g1 CHROMAT_FILE:
MSMg01no513_n13.g1 PHD_FILE: MSMg01no513_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:30 2005
(544 letters)
>mm_chr16_9808872_9809816
Length = 945
Score = 928 bits (480), Expect = 0.0
Identities = 529/548 (96%), Gaps = 7/548 (1%)
Strand = Plus / Plus
Query: 1 tcacgcacaggttctgttgactctactaatttcaagtcagaaatgaccttaaatagtcaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactcacaggttctgttgactctactaatttcaagtcagaaatgaccttaaatagtcaa 260
Query: 61 tgataggtctatgtggcttcagatctaaaccagataagcatacccatccctagatgtcag 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tgataggtctatgtggcttcagatctagaccagataagcatacccatccctagatgtcag 320
Query: 121 acacacccaagcatgagagcaatccaataaacatgaagaggccacattacaacagccaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 acacacccaagcatgagagcaatccaataaacatgaagaggccacattacagcagccaca 380
Query: 181 acacttcagccagaacagggtctgggtgatctcaactccagaggtgaccataggagtata 240
||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct: 381 acacttc---cagaacagggtcggggtggtctcaactccagaggtgaccataggagtgtg 437
Query: 241 aactaa--cat--ccaagcacgccttgctctaagcttagtggtgaacctgtcttcacaac 296
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 438 aactaattcatatccaagcacgccttgctctaagcttagtggtgaacctgtcttcacagc 497
Query: 297 aaccacttttcacacaggaaatctatgacatcccaaatgatacccagggctcaaaccctg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaccacttttcacacaggaaatctatgacatcccaaatgatacccagggctcaaaccctg 557
Query: 357 acctctgtccttccaaagcccatgtgaccaccagaggcagcagcagaatatctggtgagg 416
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acctctgtccttccaaagcccgtgtgaccaccagaggcagcagcagaatatctggtgagg 617
Query: 417 aagaataggactacactacatctatgaattagcagtgtaggggtggggctgggataggag 476
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 618 aagaataggactacactacatctatgaatcagcagtgtaggggtggggctgggatagggg 677
Query: 477 ttgcatttcctgtagatacagaaccaaaaaggctagcagttgtacaagtgtaggtgtgac 536
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 678 ttgcatttcctgtagatacagaaccaaaaaggctagcagttgtacaagtgtgggtgtgac 737
Query: 537 atgtctta 544
||||||||
Sbjct: 738 atgtctta 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 945
Length adjustment: 10
Effective length of query: 534
Effective length of database: 935
Effective search space: 499290
Effective search space used: 499290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
