BAC Information

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BAC

Clone NameMSMg01-514O08
Chromosome16 (Build37)
Map Location 21,446,116 - 21,446,410
singlet/doubletsinglet
Overlap geneVps8
Upstream geneEif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik
Downstream gene2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2, EG545152, EG666421, Sfrs10, LOC100043507, Etv5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514O08.T7 (MSMg01no514_o08.b1)MSMg01-514O08.TJ (MSMg01no514_o08.g1)
ACCAG587269AG587270
length741787
length of high quality
(start - end)
120 (274 - 393)332 (70 - 401)
definitionCHROMAT_FILE: MSMg01no514_o08.b1 PHD_FILE: MSMg01no514_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:58 2005CHROMAT_FILE: MSMg01no514_o08.g1 PHD_FILE: MSMg01no514_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGCGGAATTC
CCTTAATTTTCCGGTTCCCGTTGGCAATAAGCCCTCTTAATTGTTCTGAA
ATACACATGGCTGTTTAAGACAAAATTATAACATTGTATGTGGGTTTTAT
AATTTATGTAGATGTAATACATATGCTAATCATATCATGAAAGAGGGGGG
CAGGGAGTAATGGACATCTGTGTTATGAAGTTTCTACAATTTTACTTGAA
ATAGTAACTCTAAGTGGACTGTGAAAAGTTAAGGATGCATTGTAATCCCT
GGGGCAATCATTAAAGAATTAATGCAGATAGGTATAGCTACAAACCCAAT
AGATAAATTTAAATGGAATTCTGAAACTCCAAAAGAAGGCAGAGAAAGAA
GCATAGATTATTTTCCCACCCAGGGGCAAAGTATAACTAAATTCAACCAT
ATCAATAATTACATTAAATGTTAATGGACTAAACATTCCAATTAAAAGAC
AGAGATTGTCAGATGAGATTTTTTTCCTTAAAAAAAGACTTAACTATTTT
GCATTCTACATGAGATGCAACTCAAATCTAAAGACACAAGTTGAAAATAA
TGGCAGAAGAAAACAATCATACTCTTATATGCAATCAACATAGTGTTTCA
TATACTTGGAACACAAATGGACAGATTCCCAAGGATAGACTGACCATTCA
GTAGTTATAGTATTCCTTAGTGAGGTTACCTGTCATTTGTC
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCTGGGGTGGAGCAGGAAAATAAAGGAGAA
GGGTGTAGGGGATGGATGGGTAGACCAAAAGTAAATGTTATCAAAGTGCC
ATAAGGAAACCTTCAATCTTCTATGCTAACTAAAAAATAAAAACACTCTC
GAAATCGAGATGAATGGGAAAGACAAAAATGGGAAAGTCAAGTGGCCTGG
CTGGGCAGTGAGCTAAAGCAGAGGTGGGGTGGCTGAGCACTGAGCTAGGG
CACAGCTAGTGGGGTGGCTGAGCAGTGAGCTAAGGCACAGGTAAGGTGGC
TGAGCAGTGAGCTAAGGCACAGCTAGTGGGGGTGAGGGAGGGGGAGATGT
AGGATATTTTTTTTCCCCCCCATCTTTCTTTTTCATTTCCAATACTACTT
CTTTTTTTTTCCTCAATGTCTTCACACTCTTTTTATGTTCATTATATCCT
AATCTTTTCTTTTTTTGTTTTATCCATTTTTTTTAATCCTTTCTTTTGTA
TATTCACCCTTTTTTTTCCCCTCTTTCTATTTATCCTTTATCCTTTTTCC
CTTCCTTTTTCCCTCCTATTTTTTTACTTATTTACTAATCTTTTATCATT
CCCCCCTTTTTTTTTTTTTTCTTACTTTATCCATTCTCCTTACCCTTTAT
ATCCATATTCTTTGCACATTTCTTTATTTTTTTTTCCCTCTTTACTTATC
CTATCTATTTCTTTCACTATACTCTCTATTATCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_o08.g1 MSMg01no514_o08.g1 CHROMAT_FILE:
MSMg01no514_o08.g1 PHD_FILE: MSMg01no514_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:58 2005
         (332 letters)



>mm_chr16_21445943_21446671
          Length = 729

 Score =  491 bits (254), Expect = e-143
 Identities = 294/330 (89%), Gaps = 35/330 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctggggtggagcaggaaaataaaggagaagggtgtaggggatggatgggtagaccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tcctggggtggagcaggaaaataaaggagaagggtgtaggggatggatgggtagaccaaa 409

                                                                       
Query: 61  agtaaatgttatcaaagtgccataaggaaaccttcaatcttctatgctaactaaaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agtaaatgttatcaaagtgccataaggaaaccttcaatcttctatgctaactaaaaaata 349

                                                                       
Query: 121 aaaacactctcgaaatcgagatgaatgggaaagacaaaaatgggaaagtcaagtggcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaaacactctcgaaatcgagatgaatgggaaagacaaaaatgggaaagtcaagtggcctg 289

                                                                       
Query: 181 gctgggcagtgagctaaagcagaggtggggtggctgagcactgagctagggcacagctag 240
           || |||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 288 gcagggcagtgagctaaagcagaggtggggtggctgagcactgagcta------------ 241

                                                                       
Query: 241 tggggtggctgagcagtgagctaaggcacaggtaaggtggctgagcagtgagctaaggca 300
                                  |||||||||||||||||||||||||||||||||||||
Sbjct: 240 -----------------------aggcacaggtaaggtggctgagcagtgagctaaggca 204

                                         
Query: 301 cagctagtgggggtgagggagggggagatg 330
           ||||||||||||||||||||||||||||||
Sbjct: 203 cagctagtgggggtgagggagggggagatg 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 729
Length adjustment: 9
Effective length of query: 323
Effective length of database: 720
Effective search space:   232560
Effective search space used:   232560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)