BAC Information

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BAC

Clone NameMSMg01-514P12
Chromosome16 (Build37)
Map Location 77,682,146 - 77,773,006
singlet/doubletdoublet
Overlap genenone
Upstream gene1700063K16Rik, LOC665120, Usp25, 2810055G20Rik
Downstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514P12.T7 (MSMg01no514_p12.b1)MSMg01-514P12.TJ (MSMg01no514_p12.g1)
ACCAG587324AG587325
length742737
length of high quality
(start - end)
604 (69 - 672)666 (72 - 737)
definitionCHROMAT_FILE: MSMg01no514_p12.b1 PHD_FILE: MSMg01no514_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:04 2005CHROMAT_FILE: MSMg01no514_p12.g1 PHD_FILE: MSMg01no514_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,772,410 - 77,773,006)(77,682,146 - 77,682,811)
sequence
AATTTGCGGCTGTCTAACGACTCACTANATCCAGAGGATGCGCGGAATTC
TTTGTTTTTTCTCCTTTCAACTACTGTTCTCTAAATTTGTAACATTCTTT
CCATCTATTTATCATCTTTGCTTCTTAAAGAACTTTAGAGTGTTGTTCAT
CATTTGATTGGCTCTACGTTTGTTTGTTTGTTTGTTTGTTTGTTTTAAAC
AAGGTACTCTATATTTGGTTCTCCTTTAGACACACAAGGATAGATTTCTC
TTTGGGATGATCAAAGGGATGAATTGTTGGCAAGTTATAGAGCACAATTA
TGACATAAACATTTTCCTGTCCCCTGTGAGGCCAAATCCTGAAAGAATTC
ATTGGTTAAGAGCCTGTTACTTTTACTTTGCATGTGGTTCATTCTTTGAA
CTTAGTTATCCGCACAGTTATCAGATGCAATTCTTTCTTGTGGTTCATGA
ATAATAAAGCTCAAATGTAAATGTCAAGGGAAAGCTGAAAACGTTAAGAT
ATATAGTTCAATTTTTTTCCAGGAACTAGATTGTTGGCATCTTGCTGAGA
TATCCACAGTTTGAAACCACAACTGAACGCCCTGTGGTGATTGCCAGCCA
ACAGCAAGTGCTGACAGGCTTTTCTCTGAATGTAGATCAATGTTCACCTT
ATTCCAGGCATTGGAAAAGCAGTGGCACAGGAACTGAATCCAACACAATC
ACCAATCTATTCATATAGCTAAAACTTAAAAACAGCAACATA
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGGAAGGCAAAACCCTTGATTTTGTTATG
TCAGGAAACTGTGTGTCTCCCTAGATATTCATGTGTTTTGAAATACTGTC
CATAATGTTCCTACAAATGTTTCTTAAATTTATATTTTTGGGAAATTTTG
GATGAGATTGTTTTTCTTTATGAATTTTGAAATTGAATCAGGGAATTTGA
ATTGCAGAATTTCACCTTCCCTAAAATGTAGACATGAACTGGAAAGTCAG
TAACCAATGTGTGGTCTGTTTCAGAATTCTAAACACAAAATTTGATGGAA
TCTCTGCAAACTCCGGTGAATCTACCCTGACTATTTTAGCAGATAGCCAG
TCTTTCTGTTAACACGCTTTCCCTTCCCTATAACTCCTTCCTAAATCCTG
AAGTCCACCAGAGACCTGACTGCCATTAAAATGAATCTTAATTACAATTT
TGGGTTAAGTAAGGAAAAATATTTTTAAATGTTTTAAATCAATATTCAGC
ATTCGATTATACAAAATTGGAGTGTCTTAGGTTCATTTTATAAGTGCTTT
CTTAGTTTTCATTTTAGGAAATGTGTTTTTTCCTACTAATTTGTGTTTAA
TGTATCATGGATCTTTGGATTTTACTTTGATTACTTTTGGTAAAGAAATA
TTATTTTTGTCCCAGTCACCCTCAACTCCTTCCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_p12.b1 MSMg01no514_p12.b1 CHROMAT_FILE:
MSMg01no514_p12.b1 PHD_FILE: MSMg01no514_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:04 2005
         (604 letters)



>mm_chr16_77772083_77773087
          Length = 1005

 Score = 1096 bits (567), Expect = 0.0
 Identities = 592/605 (97%), Gaps = 9/605 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactactgttctctaaatttgtaacattctttccatctatttatcatctttgcttcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aactactgttctctaaatttgtaacattctttccatctatttatcatctttgcttcttaa 865

                                                                       
Query: 61  agaactttagagtgttgttcatcatttgattggctctacgtttgtttgtttgtttgtttg 120
           |||||||||||||||||||||||||||||||||||||||        |||||||||||||
Sbjct: 864 agaactttagagtgttgttcatcatttgattggctctac--------gtttgtttgtttg 813

                                                                       
Query: 121 tttgttttaaacaaggtactctatatttggttctcctttagacacacaaggatagatttc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 812 tttgttttaaacaaggtactctatatttggttctcctttagacacacaagaatagatttc 753

                                                                       
Query: 181 tctttgggatgatcaaagggatgaattgttggcaagttatagagcacaattatgacataa 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tctttgggatgttcaaagggatgaattgttggcaagttatagagcacaattatgacataa 693

                                                                       
Query: 241 acattttcctgtcccctgtgaggccaaatcctgaaagaattcattggttaagagcctgtt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 acattttcctgttccctgtgaggccaaatcctgaaagaattcattggttaagagcctgtt 633

                                                                       
Query: 301 acttttactttgcatgtggttcattctttgaacttagttatccgcacagttatcagatgc 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 632 acttttactttgcatgtggttcattctttgaacttagttatccggacagttatcagatgc 573

                                                                       
Query: 361 aattctttcttgtggttcatgaataataaagctcaaatgtaaatgtcaagggaaagctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aattctttcttgtggttcatgaataataaagctcaaatgtaaatgtcaagggaaagctga 513

                                                                       
Query: 421 aaacgttaagatatatagttcaa-tttttttccaggaactagattgttggcatcttgctg 479
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 512 aaacgttaagatatatagttcaattttttttccaggaactagattgttggcatcttgctg 453

                                                                       
Query: 480 agatatccacagtttgaaaccacaactgaacgccctgtggtgattgccagccaacagcaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agatatccacagtttgaaaccacaactgaacgccctgtggtgattgccagccaacagcaa 393

                                                                       
Query: 540 gtgctgacaggcttttctctgaatgtagatcaatgttcaccttattccaggcattggaaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtgctgacaggcttttctctgaatgtagatcaatgttcaccttattccaggcattggaaa 333

                
Query: 600 agcag 604
           |||||
Sbjct: 332 agcag 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1005
Length adjustment: 10
Effective length of query: 594
Effective length of database: 995
Effective search space:   591030
Effective search space used:   591030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no514_p12.g1 MSMg01no514_p12.g1 CHROMAT_FILE:
MSMg01no514_p12.g1 PHD_FILE: MSMg01no514_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:04 2005
         (666 letters)



>mm_chr16_77681946_77683011
          Length = 1066

 Score = 1249 bits (646), Expect = 0.0
 Identities = 661/666 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaggcaaaacccttgattttgttatgtcaggaaactgtgtgtctccctagatattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaaggcaaaacccttgattttgttatgtcaggaaactgtgtgtctccctagatattca 260

                                                                       
Query: 61  tgtgttttgaaatactgtccataatgttcctacaaatgtttcttaaatttatatttttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgttttgaaatactgtccataatgttcctacaaatgtttcttaaatttatatttttgg 320

                                                                       
Query: 121 gaaattttggatgagattgtttttctttatgaattttgaaattgaatcagggaatttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaattttggatgagattgtttttctttatgaattttgaaattgaatcagggaatttgaa 380

                                                                       
Query: 181 ttgcagaatttcaccttccctaaaatgtagacatgaactggaaagtcagtaaccaatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcagaatttcaccttccctaaaatgtagacatgaactggaaagtcagtaaccaatgtg 440

                                                                       
Query: 241 tggtctgtttcagaattctaaacacaaaatttgatggaatctctgcaaactccggtgaat 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggctgtttcagaattctaaacacaaaatttgatggaatctctgcaaactccggtgaat 500

                                                                       
Query: 301 ctaccctgactattttagcagatagccagtctttctgttaacacgctttcccttccctat 360
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 501 ctaccctgactattttagcagatagccagtctttctgttaacatgctttcccttccttat 560

                                                                       
Query: 361 aactccttcctaaatcctgaagtccaccagagacctgactgccattaaaatgaatcttaa 420
           ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactccttcgtaaatcctgcagtccaccagagacctgactgccattaaaatgaatcttaa 620

                                                                       
Query: 421 ttacaattttgggttaagtaaggaaaaatatttttaaatgttttaaatcaatattcagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacaattttgggttaagtaaggaaaaatatttttaaatgttttaaatcaatattcagca 680

                                                                       
Query: 481 ttcgattatacaaaattggagtgtcttaggttcattttataagtgctttcttagttttca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcgattatacaaaattggagtgtcttaggttcattttataagtgctttcttagttttca 740

                                                                       
Query: 541 ttttaggaaatgtgttttttcctactaatttgtgtttaatgtatcatggatctttggatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttaggaaatgtgttttttcctactaatttgtgtttaatgtatcatggatctttggatt 800

                                                                       
Query: 601 ttactttgattacttttggtaaagaaatattatttttgtcccagtcaccctcaactcctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttactttgattacttttggtaaagaaatattatttttgtcccagtcaccctcaactcctt 860

                 
Query: 661 cctact 666
           ||||||
Sbjct: 861 cctact 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)