BAC Information

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BAC

Clone NameMSMg01-515F08
Chromosome16 (Build37)
Map Location 39,333,632 - 39,514,535
singlet/doubletdoublet
Overlap genenone
Upstream gene4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515F08.T7 (MSMg01no515_f08.b1)MSMg01-515F08.TJ (MSMg01no515_f08.g1)
ACCAG587597AG587598
length788788
length of high quality
(start - end)		655 (45 - 699)607 (76 - 682)
definitionCHROMAT_FILE: MSMg01no515_f08.b1 PHD_FILE: MSMg01no515_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:36 2005CHROMAT_FILE: MSMg01no515_f08.g1 PHD_FILE: MSMg01no515_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,513,885 - 39,514,535)(39,333,632 - 39,334,238)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGATGAATACTAGATGGTGAAGCACCTAAAGAAGTGTTCTT
CTACTACTATTCTACTCCTACTTCTTTCAAAAAGTTTTACCATTTATTTT
CCCCATCCATGTTATTTCTAATATTCATTGTCATGCTCTTTTAAAAAAAA
TTATCAGAGTTACATTTACCTCAGGGAATTTCTTCTGTAATACACTGACA
ATTTTCTTATAAATTCTCAAGTGTGCTTCACTTTCTTGCACCTGTCCCTG
TTCAGTTCTCCTCTATCCCGAGTTGTTTAGGACATTTTTCATGACATTTT
TATCTTTTACTCCCTTCTTTCCCTTCTTCTCTGTCTTGTGTGCTGTCCCC
ATCTATGACACTCCTACCTAGCTTTCTAACATCAGCAGCTGCACAGTTTT
ACAGAAACACCCTCCAGAAACAGCTAATTGCTCAGGGAATTGTTACTCCC
TAAAGCCAATGGGAAACTTTTGGAATCTCCTATTAGTCTCAGACTAAAAT
CCTACCTCAATCAGAGATAATTATTAAACTAAGCAAAAGGATTTCAATAG
CCTTCTCAAATTGATCCCAAAGACGCCTCCTGAAGTGAGGCTGCTTCACT
CAGCTTTAGCCTCTTTCAATTAACTCACAGCACAAAGCACTCCCAAGAGA
CCAGGAGCAAACAAAATCCAAATTACAAACAAATGGAAATATTTGAAGCA
ATTAAATCCTTGGTGGCTTAACTCCANGGTGCCCCGGA

CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTACCTTGAGAAATATCCATTAAG
GATCACAACTATCTATGAAAGGCTCTAACTAATTTATACAATGTAGGCAC
ATAGAAACATAAAATATGCATATTCTTGGAGAGACATCTTCATCTATGGG
TACCTAATCCTGCCTGGAGTCATGTGCACTAACGCAAAAGGCACCCTTTG
TAGGAGTGATGTGGATGAGGGCCCATGTGTGAGAGTCTATGATTTGATTG
ACCATGGCAAAGCTTATTAAGGACAATATTGCAGAAATAAGAAAGAAATG
CCAGGTAGGCAGGCCACAACTTTAACTTGTTTTCAATGCCAGGCATATTT
TCAAGGCTTGTTTAGAGAGGCAGGACTAAGGAAGATATGGTGGAAAAATA
ATTTATTTTAATAACCATACCTTACTACTGGAAACTACCAGGGGAGAAAT
GTGTATACTAACTCACCTAACAAACCCTTTGGTTTACAACGGTGACTTGT
TTACAATTATGTGGTTGCAATAGTGGTACAAAAGTTATGGGAATAGCCAA
CCACTATGTGGGTAGATTTGAGACCTACTCCATGAGATGGAAGCTATTCC
TGATCCTGTTCAGATAGCCAATAACCTTAGACTAGATAGGTCAGGGACCC
TGTGGAAAAATCAACCTGCTAAAGAAACAACATAAGATGACTCTGAAACT
TTTGATATACATAGATCAGTGTATTGCTCAATCGTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_f08.b1 MSMg01no515_f08.b1 CHROMAT_FILE:
MSMg01no515_f08.b1 PHD_FILE: MSMg01no515_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:36 2005
         (655 letters)



>mm_chr16_39513631_39514685
          Length = 1055

 Score = 1251 bits (647), Expect = 0.0
 Identities = 650/651 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaactgatgaatactagatggtgaagcacctaaagaagtgttcttctactact 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 gaattctcaactgaggaatactagatggtgaagcacctaaagaagtgttcttctactact 846

                                                                       
Query: 65  attctactcctacttctttcaaaaagttttaccatttattttccccatccatgttatttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 attctactcctacttctttcaaaaagttttaccatttattttccccatccatgttatttc 786

                                                                       
Query: 125 taatattcattgtcatgctcttttaaaaaaaattatcagagttacatttacctcagggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 taatattcattgtcatgctcttttaaaaaaaattatcagagttacatttacctcagggaa 726

                                                                       
Query: 185 tttcttctgtaatacactgacaattttcttataaattctcaagtgtgcttcactttcttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tttcttctgtaatacactgacaattttcttataaattctcaagtgtgcttcactttcttg 666

                                                                       
Query: 245 cacctgtccctgttcagttctcctctatcccgagttgtttaggacatttttcatgacatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cacctgtccctgttcagttctcctctatcccgagttgtttaggacatttttcatgacatt 606

                                                                       
Query: 305 tttatcttttactcccttctttcccttcttctctgtcttgtgtgctgtccccatctatga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tttatcttttactcccttctttcccttcttctctgtcttgtgtgctgtccccatctatga 546

                                                                       
Query: 365 cactcctacctagctttctaacatcagcagctgcacagttttacagaaacaccctccaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cactcctacctagctttctaacatcagcagctgcacagttttacagaaacaccctccaga 486

                                                                       
Query: 425 aacagctaattgctcagggaattgttactccctaaagccaatgggaaacttttggaatct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aacagctaattgctcagggaattgttactccctaaagccaatgggaaacttttggaatct 426

                                                                       
Query: 485 cctattagtctcagactaaaatcctacctcaatcagagataattattaaactaagcaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cctattagtctcagactaaaatcctacctcaatcagagataattattaaactaagcaaaa 366

                                                                       
Query: 545 ggatttcaatagccttctcaaattgatcccaaagacgcctcctgaagtgaggctgcttca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggatttcaatagccttctcaaattgatcccaaagacgcctcctgaagtgaggctgcttca 306

                                                              
Query: 605 ctcagctttagcctctttcaattaactcacagcacaaagcactcccaagag 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctcagctttagcctctttcaattaactcacagcacaaagcactcccaagag 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_f08.g1 MSMg01no515_f08.g1 CHROMAT_FILE:
MSMg01no515_f08.g1 PHD_FILE: MSMg01no515_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:36 2005
         (607 letters)



>mm_chr16_39333432_39334438
          Length = 1007

 Score = 1174 bits (607), Expect = 0.0
 Identities = 607/607 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaccttgagaaatatccattaaggatcacaactatctatgaaaggctctaactaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaccttgagaaatatccattaaggatcacaactatctatgaaaggctctaactaattt 260

                                                                       
Query: 61  atacaatgtaggcacatagaaacataaaatatgcatattcttggagagacatcttcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacaatgtaggcacatagaaacataaaatatgcatattcttggagagacatcttcatct 320

                                                                       
Query: 121 atgggtacctaatcctgcctggagtcatgtgcactaacgcaaaaggcaccctttgtagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggtacctaatcctgcctggagtcatgtgcactaacgcaaaaggcaccctttgtagga 380

                                                                       
Query: 181 gtgatgtggatgagggcccatgtgtgagagtctatgatttgattgaccatggcaaagctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgatgtggatgagggcccatgtgtgagagtctatgatttgattgaccatggcaaagctt 440

                                                                       
Query: 241 attaaggacaatattgcagaaataagaaagaaatgccaggtaggcaggccacaactttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaggacaatattgcagaaataagaaagaaatgccaggtaggcaggccacaactttaa 500

                                                                       
Query: 301 cttgttttcaatgccaggcatattttcaaggcttgtttagagaggcaggactaaggaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgttttcaatgccaggcatattttcaaggcttgtttagagaggcaggactaaggaaga 560

                                                                       
Query: 361 tatggtggaaaaataatttattttaataaccataccttactactggaaactaccagggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatggtggaaaaataatttattttaataaccataccttactactggaaactaccagggga 620

                                                                       
Query: 421 gaaatgtgtatactaactcacctaacaaaccctttggtttacaacggtgacttgtttaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatgtgtatactaactcacctaacaaaccctttggtttacaacggtgacttgtttaca 680

                                                                       
Query: 481 attatgtggttgcaatagtggtacaaaagttatgggaatagccaaccactatgtgggtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attatgtggttgcaatagtggtacaaaagttatgggaatagccaaccactatgtgggtag 740

                                                                       
Query: 541 atttgagacctactccatgagatggaagctattcctgatcctgttcagatagccaataac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atttgagacctactccatgagatggaagctattcctgatcctgttcagatagccaataac 800

                  
Query: 601 cttagac 607
           |||||||
Sbjct: 801 cttagac 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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