Query= MSMg01no516_j02.b1 MSMg01no516_j02.b1 CHROMAT_FILE:
MSMg01no516_j02.b1 PHD_FILE: MSMg01no516_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:21 2005
(684 letters)
>mm_chr16_29847440_29848523
Length = 1084
Score = 1234 bits (638), Expect = 0.0
Identities = 665/676 (98%), Gaps = 4/676 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtgaggctggtgtataagaacatattgggtcagaagcctactaagaataaaga 64
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 821 gaattcagcgaggctggtgtataagaacatgttgggtcagaagcctactaagaataaaga 762
Query: 65 gcctggactagcatgaggaagtgtcagagtggaaggaccactgttgtctgtcaagaagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gcctggactagcatgaggaagtgtcagagtggaaggaccactgttgtctgtcaagaagaa 702
Query: 125 ttctccaggctgccctggctatgaatggccccgaaaataacgttctccaggccctataca 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 701 ttctccaggctgccctggctatgaatggccctgaaaataacgttctccaggccctataca 642
Query: 185 ggcatggggcctaggggactgggtattagtaaaagtttcagtttcagttttttgttctgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggcatggggcctaggggactgggtattagtaaaagtttcagtttcagttttttgttctgt 582
Query: 245 ttttcttgttcctgtttctgcgtatgctacttaaaacgtattttatttatttatttctta 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 581 ttttcttgttcctgtttctgcgtatgctacttaaaatgtattttatttatttatttctta 522
Query: 305 ccttggggctagagtgggcattgtcgagcactaagggatggctgaacctgtctttcaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ccttggggctagagtgggcattgtcgagcactaagggatggctgaacctgtctttcaaaa 462
Query: 365 ccactattcccagttctcttcctgcagctagccatgatgaagcaagcagacatgagagtg 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 461 ccactattcccagttctcttcctgcagctagccatgatgaagcaagcggacatgagagtg 402
Query: 425 tgtggagggagaaaagatgtgacctgggatggagtgagacctttcagaagccaactagcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgtggagggagaaaagatgtgacctgggatggagtgagacctttcagaagccaactagcc 342
Query: 485 gtcctcaggcgaggctgtggaaggtaatggcctgaactcacttcatctctggcatcactc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtcctcaggcgaggctgtggaaggtaatggcctgaactcacttcatctctggcatcactc 282
Query: 545 cagtaccaatccctgtgtgaccttgggtgacttatagttcctatgtgaactgcaactatg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cagtaccaatccctgtgtgaccttgggtgacttatagttcctatgtgaactgcaactatg 222
Query: 605 tcctgaagagagagaggacacatatgcacacaagcacacacacacacacacaca----ca 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 221 tcctgaagagagagaggacacatatgcacacaagcacacacacacacacacacatgcgcg 162
Query: 661 cacacacacatacaca 676
||||||||||| ||||
Sbjct: 161 cacacacacatgcaca 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_j02.g1 MSMg01no516_j02.g1 CHROMAT_FILE:
MSMg01no516_j02.g1 PHD_FILE: MSMg01no516_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:21 2005
(508 letters)
>mm_chr16_29645994_29646901
Length = 908
Score = 934 bits (483), Expect = 0.0
Identities = 505/519 (97%), Gaps = 11/519 (2%)
Strand = Plus / Plus
Query: 1 tctagttgtcattatttaatccagatatttaagagaaatggtagtttgctttacagctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagttgtcattatttaatccagatatttaagagaaatggtagtttgctttacagctag 260
Query: 61 gcatgctttttaccagaatatatcctatttcacataaaaggtgacttttcaatagacttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatgctttttaccagaatatatcctatttcacataaaaggtgacttttcaatagacttg 320
Query: 121 ctcttttcatttggcatgtgtcagcagacctctatgtgtttctaaatcagaggagggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttttcatttggcatgtgtcagcagacctctatgtgtttctaaatcagaggagggtaa 380
Query: 181 gcagggctcatccttagcattgatgcctacaggactgaaggtcaagtttgaaatcacttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagggctcatccttagcattgatgcctacaggactgaaggtcaagtttgaaatcacttc 440
Query: 241 aaaaaagtagacatttcctcagtcaggagtgagactcagcaaggaatagggccttttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aaaaaagtagacatttcctcagtcaggagtgagactcagcaaggaatagtgccttttttt 500
Query: 301 tttttttttttttttttt-----------cctattctgggtaacagccctggttgtccta 349
|||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 501 tttttttttttttttttttttttttttttcctattctgtgtaacagccctggttgtccta 560
Query: 350 aaacttgatttgtagaccaggctgacctcaaactcacagagatctgcctgcctctggctc 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacttgatttgtagaccaggctgacctcaaactcacagagatctgcctgcctctggctc 620
Query: 410 cccaatgctggtattaaaggtttgcaccaccatgcctggttaaagaatgctttttaaggt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccaatgctggtattaaaggtttgcaccaccatgcctggttaaagaatgctttttaaggt 680
Query: 470 agagaatctcttggggctggaggaaaaaaaaaggctcag 508
|||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagaatctcttggggctggaggaaaaaaaaaggctcag 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
