Query= MSMg01no516_m11.b1 MSMg01no516_m11.b1 CHROMAT_FILE:
MSMg01no516_m11.b1 PHD_FILE: MSMg01no516_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:38 2005
(623 letters)
>mm_chr16_37394022_37395044
Length = 1023
Score = 1170 bits (605), Expect = 0.0
Identities = 616/620 (99%), Gaps = 1/620 (0%)
Strand = Plus / Plus
Query: 5 gaattctcatttttccccatataattatgtagttcttaataaaggttactcattagatgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatttttccccatataattatgtagttcttaataaaggttactcattagatgt 264
Query: 65 ataattgtgatttaaatttgccccactaagatatttggtatcttagaataatttaaaatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataattgtgatttaaatttgccccactaagatatttggtatcttagaataatttaaaatc 324
Query: 125 aagaaagaacattataagaatatgtgcctgatttataagtttaaaaatattctgccatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaaagaacattataagaatatgtgcctgatttataagtttaaaaatattctgccatat 384
Query: 185 gtgtagtgcactgactcttccttcttgagatttatctttgttatatgtgtctaggtattt 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtagtgcgctgactcttccttcttgagatttatctttgttatatgtgtctaggtattt 444
Query: 245 ggcctacatgtatgtttgtgcaccagatgcatacagtgcccacagatgctggaagaaggc 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 ggcctacatgtatgtttgtgcaccagatgcatacagggcccacagatgctggaagaaggc 504
Query: 305 atcaaatcctctggaactggagtttcaggtggttgttagccacatgcaggtactgagaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcaaatcctctggaactggagtttcaggtggttgttagccacatgcaggtactgagaat 564
Query: 365 caaacccaggtcttctggagaagctgtcagtgctcttaaacactgagttatctctccagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaacccaggtcttctggagaagctgtcagtgctcttaaacactgagttatctctccagc 624
Query: 425 cttgtgtgttaacaaagctttcaaaagtccaagaaaggaggaaagttgggaaaaaaa-tg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 cttgtgtgttaacaaagctttcaaaagtccaagaaaggaggaaagttgggaaaaaaaatg 684
Query: 484 ataggatatagcttanaagtgaaacctgcattctacaaggcacagtaagtaaaggcaaca 543
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataggatatagcttaaaagtgaaacctgcattctacaaggcacagtaagtaaaggcaaca 744
Query: 544 ctgaagagagacctcattttcctcctgtccatcagccttaatgaatgccttggcttttgg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgaagagagacctcattttcctcctgtccatcagccttaatgaatgccttggcttttgg 804
Query: 604 tggtacagagctagggaaaa 623
||||||||||||||||||||
Sbjct: 805 tggtacagagctagggaaaa 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_m11.g1 MSMg01no516_m11.g1 CHROMAT_FILE:
MSMg01no516_m11.g1 PHD_FILE: MSMg01no516_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:38 2005
(475 letters)
>mm_chr16_37558616_37559490
Length = 875
Score = 729 bits (377), Expect = 0.0
Identities = 397/405 (98%), Gaps = 4/405 (0%)
Strand = Plus / Minus
Query: 73 ttcttttcttaagcgtgcatttttatgcctgtgcatgtgtgtctctgcacacgtgtgcag 132
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 875 ttctattcttaagcgtgcatttttatgcctgtgcatgtgtgtctctgcacacatgtgcag 816
Query: 133 gtgcctgtggaggcagagaggatattagagctcctggagcagggattacagacagtgggg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 gtgcctgtggaggcagagaggatattagagctcctggagcagggattacagacagtgggg 756
Query: 193 agctaccatgtgggtgctgagaatcagagctgggtcctgtcccagagcagctagtgctct 252
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 755 agctaccatgtgggtgctgagaatcagagctgggtcctgtcccagagcagttagtgctct 696
Query: 253 gaacagctgagctgtctctcggcctcttggttactgttctttaatagaaaaacactctcc 312
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gaacagctgggctgtctctcggcctcttggttactgttctttaatagaaaaacactctcc 636
Query: 313 tgtcggtcttttgaataccatcaactcaagagtttaactttgttgttctttaaattcatt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgtcggtcttttgaataccatcaactcaagagtttaactttgttgttctttaaattcatt 576
Query: 373 gttctttaaattcattgctagctatgtaagcttgc--cagtttaagagatttggttagct 430
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 575 gttctttaaattcattgctagctatgtaagcttgcttc--tttaagagatttggttagct 518
Query: 431 cactgcagtgacacatgctttataagtctacactagggaagctga 475
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cactgcagtgacacatgctttataagtctacactagggaagctga 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
