BAC Information

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BAC

Clone NameMSMg01-518D05
Chromosome16 (Build37)
Map Location 31,044,008 - 31,231,563
singlet/doubletdoublet
Overlap geneAI480653, Centb2
Upstream geneHes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
Downstream genePpp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518D05.T7 (MSMg01no518_d05.b1)MSMg01-518D05.TJ (MSMg01no518_d05.g1)
ACCAG589765AG589766
length756763
length of high quality
(start - end)		640 (52 - 691)591 (76 - 666)
definitionCHROMAT_FILE: MSMg01no518_d05.b1 PHD_FILE: MSMg01no518_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:32 2005CHROMAT_FILE: MSMg01no518_d05.g1 PHD_FILE: MSMg01no518_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,044,008 - 31,044,643)(31,231,192 - 31,231,563)
sequence
NNTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTGGATATTACGTTGAGGGAAAAGAGGCCACTCCCCAA
AGATGATGCACAATTCGGCCGGTAAAACACTTTCACAATGACAAGAGCCT
AGAACTCGTAAAGTGGAACAGTGAACACCATGAGCTGAGAGATTACCAAG
GGAATACAAAGGAACCCCCTGCCCCCACCGGATCCACCTCTGCTAATGGA
AATGCCCCATGCTTGAGGACCCCAATGTAGTCTTGCAAGATGCTACCACT
GGGGCAAAACAGGTAGAGAATCTCTGTATTTCTTCTTAAAACTAAACATT
AATGTAGTATTATCTCAACAGAGTAAGACTCAAGAGACCCTGCTTCAGCT
GGGCAGTGGTGTCGCACGCCTTTAATCCCAGCAGTTGAGAGGCAGAGGCA
GGTGGATTTCTGACTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGG
ACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAACCCAAA
CCACACAAACAAACAAACAAACAAACAAACAAAAAAAGACCCTGCTTCAG
TCCAGCTCAGCTGGATGCCTCTGGCCATAAGCTATATATAATCAGTTTCA
ACCATGACTAAATGAGGACCCAAGCTCATCAGCCTGCTGATTGTTACCCT
CAGATGCTCTCTGGCCATTGACCAGAAACACCAGTTCTCAGCACCTTCTC
TGACAA

NCCATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAAATGTGTTCTCTTCCATCTGAC
ATGCCGCTGTGAGGTTTTCCTCAGCTGAGGTGAATCCCGGAACTTTTTGT
CTTCTCTTCGTTTCAAACAAAGATAGAAACAAGCCTTATGTCTTGGCATA
CTATTAGTGATTTATCTCTGTTGCTGTTTTAAACTTTTTATTCTTTGATT
TTTAAAATTTTAAAATTTATTTTATTTGTTTTGTGTTTGAGACAGAGTCT
TTCTATGTAGCCCTGGCTATCTCAAAACTCACAATGTAGACCAGGCTGGC
CTTGAACTCATAGAGATCCATTTGCCTTTGCTTCCTGAGTCCTGGGATCG
AAGGAGTGCTCTACCACAACTAACCCTTTTACATTTTTATAAACTTTTTA
ATTTTATGTGTATGAGTGTTTTACACGCATGTATGATGTAACCACGTGTA
TGTCTGGTGCCATCAGAGCCAGAAGAAAGCATTGAATGCTGTGGTAGTTT
GAGTAAGAATGCCCCCTCCCATTGGCACATTTATTTGAATGCTTAGTCAC
TGTGAAATGGCACTATTTAAGGATTAGGAGGTATGGCCTCTTCTATGATC
ACTGCAACTCTTACAAAGAAAAACATTCAACTGGGGGCTAGCTTACAGTT
CAGAGGTTTACTTCACTAGTCTACCGTCATTGTGGCAGGAAGCACGGTGG
CACACAAGCAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_d05.b1 MSMg01no518_d05.b1 CHROMAT_FILE:
MSMg01no518_d05.b1 PHD_FILE: MSMg01no518_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:32 2005
         (640 letters)



>mm_chr16_31043804_31044843
          Length = 1040

 Score = 1176 bits (608), Expect = 0.0
 Identities = 629/636 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggatattacgttgagggaaaagaggccactccccaaagatgatgcacaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggatattacgttgagggaaaagaggccactccccaaagatgatgcacaatt 264

                                                                       
Query: 65  cggccggtaaaacactttcacaatgacaagagcctagaactcgtaaagtggaacagtgaa 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cggccggtaaaacacttccacaatgacaagagcctagaactcgtaaagtggaacagtgaa 324

                                                                       
Query: 125 caccatgagctgagagattaccaagggaatacaaaggaaccccctgcccccaccggatcc 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 caccatgagctgagagattaccaagggaatacaaaggaaccccttgcccccaccggatcc 384

                                                                       
Query: 185 acctctgctaatggaaatgccccatgcttgaggaccccaatgtagtcttgcaagatgcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acctctgctaatggaaatgccccatgcttgaggaccccaatgtagtcttgcaagatgcta 444

                                                                       
Query: 245 ccactggggcaaaacaggtagagaatctctgtatttcttcttaaaactaaacattaatgt 304
           |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 445 ccactggggcaaaacaggcagagaatctcagtatttcttcttaaaactacacattaatgt 504

                                                                       
Query: 305 agtattatctcaacagagtaagactcaagagaccctgcttcagctgggcagtggtgtcgc 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 505 agtattatctcaacagagtaagactcaagagaccctgcttcagctgggcagtggtggcac 564

                                                                       
Query: 365 acgcctttaatcccagcagttgagaggcagaggcaggtggatttctgactttgaggccag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acgcctttaatcccagcagttgagaggcagaggcaggtggatttctgactttgaggccag 624

                                                                       
Query: 425 cctggtctacagagtgagttccaggacagccagggctatacagagaaaccctgtctcaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctggtctacagagtgagttccaggacagccagggctatacagagaaaccctgtctcaaa 684

                                                                       
Query: 485 aaaccaaaacccaaaccacacaaacaaacaaacaaacaaacaaacaaaaaaagaccctgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaccaaaacccaaaccacacaaacaaacaaacaaacaaacaaacaaaaaaagaccctgc 744

                                                                       
Query: 545 ttcagtccagctcagctggatgcctctggccataagctatatataatcagtttcaaccat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcagtccagctcagctggatgcctctggccataagctatatataatcagtttcaaccat 804

                                               
Query: 605 gactaaatgaggacccaagctcatcagcctgctgat 640
           ||||||||||||||||||||||||||||||||||||
Sbjct: 805 gactaaatgaggacccaagctcatcagcctgctgat 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_d05.g1 MSMg01no518_d05.g1 CHROMAT_FILE:
MSMg01no518_d05.g1 PHD_FILE: MSMg01no518_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:32 2005
         (591 letters)



>mm_chr16_31231192_31232182
          Length = 991

 Score =  665 bits (344), Expect = 0.0
 Identities = 365/372 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaatgtgttctcttccatctgacatgccgctgtgaggttttcctcagctgaggtgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaaaatgtgttctcttccatctgacatgccgctgtgaggttttcctcagctgaggtgaat 313

                                                                       
Query: 61  cccggaactttttgtcttctcttcgtttcaaacaaagatagaaacaagccttatgtcttg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 312 cccggaactttttgtcttctcttcgtttcaaacaaagatagaaacaagccttgtgtcttg 253

                                                                       
Query: 121 gcatactattagtgatttatctctgttgctgttttaaactttttattctttgatttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 252 gcatactattagtgatttatctctgttgctgttttaaactttttattctttgattttaaa 193

                                                                       
Query: 181 aattttaaaatttattttatttgttttgtgtttgagacagagtctttctatgtagccctg 240
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 192 aatttttaaatttattttatttgttttgtgtttgagacagggtctttctatgtagccctg 133

                                                                       
Query: 241 gctatctcaaaactcacaatgtagaccaggctggccttgaactcatagagatccatttgc 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gctatctcaaaactcacattgtagaccaggctggccttgaactcatagagatccatttgc 73

                                                                       
Query: 301 ctttgcttcctgagtcctgggatcgaaggagtgctctaccacaactaacccttttacatt 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 72  ctttgcttcctgagtcctgggattgaaggagtgctctaccacaactaacccttttacatt 13

                       
Query: 361 tttataaacttt 372
           |||||| |||||
Sbjct: 12  tttatagacttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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