BAC Information

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BAC

Clone NameMSMg01-518O09
Chromosome16 (Build37)
Map Location 89,371,199 - 89,550,674
singlet/doubletdoublet
Overlap geneLOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
Downstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518O09.T7 (MSMg01no518_o09.b1)MSMg01-518O09.TJ (MSMg01no518_o09.g1)
ACCAG590298AG590299
length749753
length of high quality
(start - end)		628 (72 - 699)676 (78 - 753)
definitionCHROMAT_FILE: MSMg01no518_o09.b1 PHD_FILE: MSMg01no518_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:27 2005CHROMAT_FILE: MSMg01no518_o09.g1 PHD_FILE: MSMg01no518_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,550,068 - 89,550,674)(89,371,199 - 89,371,869)
sequence
GCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGG
AATTCTTTCATTGCCAGGATTTTATATAAGGGATGAGCACTTTAAGTTTT
TTTCAGTTTGTATGCCAGCTCAATTATATCTTTTTTTTTTTAATTCAAAC
ATATGTCAACACATTTTTTAATTTAAAAGGGAGAAAAAAATTAAATGTAA
CTAAAATTTTCAGAGTAGTGCCAAGTGCTAGAATCCAGGGAAGAGTTAGA
CAAGGTGTTATAGATCTTTTTCTTAGCGAGACAAAGCTTAGTGAGAGATG
CCAACAAACACGTTAGGAAGAGTGAGAAACCATGACCCCGGTTCCTTCAT
AGGATCCTCAAACACTGAAATTATCAAGAGCATTCGAACCATCAAAGACC
ATCTTAATTAGAAAAGAGGATGGTTTCATTTATCTATTCTTATGTTTATA
AAGATTTATTCACATGTGTATTTGTGTATTTATTTGCATACTTGTGTATG
TTTACACAGGTGTATGTTTACATGCGTATTAATGTAGGTGAGAAGAGAGT
ATTAGAGCTCTTGGAGCCGGCGTTACAAGCCTTTTGAGAGGCAGCTTCTT
ACCTGGATACCATGACCTGAACTCTAGTCCTCGTGGTTGAGCAACAAGCA
CTTTAACCACTGAGCCCTCTTTTCAGCCCCTAGAGGATAGGTTTAATACA
AGCAAGTGTGGATTAGGATGACAGACAAAGAGTAAAACTAACTTAAGAA

TGCGATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCTTCTACTGTAAACCTGGT
CAGAAGTCCATGACAGAGGCCCAGGTTGCAAAGCAATGGTGGTGGCTGGC
TTGCTAAATTGCCATGACATACTTGTCAGATTGCCTTCCAAACACTTATG
TTTATATGCCCCAAGGATCAGTCTCACTCTTTGCTTTGATCAGAGGACTT
CTATGGTTGCTGCAAAGACTCATATCTGATTAAAGTAATGGGGATAAGAT
GCCTTTGACCTTTAACCTTGCCTGTGTCACACACTCCAAAGCTAAGGAAA
TATCACAGAAAAGAAGATAGAAAGGGCATAAGAGCCTGAGAAAGAACTAG
AGTGCTGTGGAATACAATCTTCCATGCATGAGCAGGTGCCATATTTACAA
ACTCTAGAATATTCCCATGTAATCCTGTAGTCTTCATAAAATAGGAAATC
TTGAAACAGACTCCAAACTGGCATAAAGTCCATGATATGCAACATCCTGT
TTTTGATGTTTTATTGACTGGAGATTTATGTCCCTATCATGTGTCAACTA
ACCTTTCTGGCATTGCTTAAGACAATTTATTACTAGGGCTTAAATCTGGA
TTTTTAACCTATTGGGATTTACTCTGGAGACTACTGAACCATAATTAAAT
GTGAGTGCACATAAAGCAGCATTTTTTTTTTGCAAATATGCATTGTATAC
CAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_o09.b1 MSMg01no518_o09.b1 CHROMAT_FILE:
MSMg01no518_o09.b1 PHD_FILE: MSMg01no518_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:27 2005
         (628 letters)



>mm_chr16_89550068_89551095
          Length = 1028

 Score = 1065 bits (551), Expect = 0.0
 Identities = 593/607 (97%), Gaps = 1/607 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatataagggatgagcactttaagtttttttcagtttgtatgccagctcaattatatct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 607 ttatataagggatgagcactttaagtttttttcagtttgtatgccagctcaattatgtct 548

                                                                       
Query: 61  ttttttttttaattcaaacatatgtcaacacattttttaatttaaaagggagaaaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 547 ttttttttttaattcaaacatatgtcaacacattttttaatttaaaagggagaaaaagat 488

                                                                       
Query: 121 taaatgtaactaaaattttcagagtagtgccaagtgctagaatccagggaagagttagac 180
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 487 taaatgtaactaaatttttcagagtagtgcaaagtgctagaatccagggaagagttagac 428

                                                                       
Query: 181 aaggtgttatagatctttttcttagcgagacaaagcttagtgagagatgccaacaaacac 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 427 aaggtgttatagatctttttcttagctagacaaagcttagtgagagatgccaacaaacac 368

                                                                       
Query: 241 gttaggaagagtgagaaaccatgaccccggttccttcataggatcctcaaacactgaaat 300
           || ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 367 gtaaggaagaatgagaaaccatgaccccggttcctttatacgatcctcaaacactgaaat 308

                                                                       
Query: 301 tatcaagagcattcgaaccatcaaagaccatcttaattagaaaagaggatggtttcattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tatcaagagcattcgaaccatcaaagaccatcttaattagaaaagaggatggtttcattt 248

                                                                       
Query: 361 atctattcttatgtttataaagatttattcacatgtgtatttgtgtatttatttgcatac 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 247 atctattcttatgtttataaagatttattcatatgtgtatttgtgtatttatttgcatac 188

                                                                       
Query: 421 ttgtgtatgtttacacaggtgtatgtttacatgcgtattaatgtaggtgagaagagagta 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 187 ttgtgtatgtttacacaggtgtatgtttacatgcgtattaatgtaggtgagaagagggta 128

                                                                       
Query: 481 ttagagctcttggagccggcgttacaagccttttgagaggc-agcttcttacctggatac 539
           ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 127 ttagagctcttggagccggtgttacaagccttttgagaggccagcttcttacctggatac 68

                                                                       
Query: 540 catgacctgaactctagtcctcgtggttgagcaacaagcactttaaccactgagccctct 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 67  catgacctgaactctagtcctcgtggttgagcaacaagcactttaaccacttagccctct 8

                  
Query: 600 tttcagc 606
           |||||||
Sbjct: 7   tttcagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_o09.g1 MSMg01no518_o09.g1 CHROMAT_FILE:
MSMg01no518_o09.g1 PHD_FILE: MSMg01no518_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:27 2005
         (676 letters)



>mm_chr16_89370999_89372073
          Length = 1075

 Score = 1237 bits (640), Expect = 0.0
 Identities = 664/672 (98%), Gaps = 1/672 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcttctactgtaaacctggtcagaagtccatgacagaggcccaggttgcaaagcaat 60
           ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||
Sbjct: 201 atttcttctactgtaaacctggtcaaaagtccatgacagaggccctggtttcaaagctat 260

                                                                       
Query: 61  ggtggtggctggcttgctaaattgccatgacatacttgtcagattgccttccaaacactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtggtggctggcttgctaaattgccatgacatacttgtcagattgccttccaaacactt 320

                                                                       
Query: 121 atgtttatatgccccaaggatcagtctcactctttgctttgatcagaggacttctatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtttatatgccccaaggatcagtctcactctttgctttgatcagaggacttctatggt 380

                                                                       
Query: 181 tgctgcaaagactcatatctgattaaagtaatggggataagatgcctttgacctttaacc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgctgcaaagactcatatctgattaaagtaatggggataagatgcctttgacatttaacc 440

                                                                       
Query: 241 ttgcctgtgtcacacactccaaagctaaggaaatatcacagaaaagaagatagaaagggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcctgtgtcacacactccaaagctaaggaaatatcacagaaaagaagatagaaagggc 500

                                                                       
Query: 301 ataagagcctgagaaagaactagagtgctgtggaatacaatcttccatgcatgagcaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ataagagcctgagaaagaactagagtgctgtggaatacaatcttccatgtatgagcaggt 560

                                                                       
Query: 361 gccatatttacaaactctagaatattcccatgtaatcctgtagtcttcataaaataggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccatatttacaaactctagaatattcccatgtaatcctgtagtcttcataaaataggaa 620

                                                                       
Query: 421 atcttgaaacagactccaaactggcataaagtccatgatatgcaacatcctgtttttgat 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcttgtaacagactccaaactggcataaagtccatgatatgcaacatcctgtttttgat 680

                                                                       
Query: 481 gttttattgactggagatttatgtccctatcatgtgtcaactaacctttctggcattgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttttattgactggagatttatgtccctatcatgtgtcaactaacctttctggcattgct 740

                                                                       
Query: 541 taagacaatttattactagggcttaaatctggatttttaacctattgggatttactctgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taagacaatttattactagggcttaaatctggatttttaacctattgggatttactctgg 800

                                                                       
Query: 601 agactactgaaccataattaaatgtgagtgcacataaagcagcattttttttttgcaaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 801 agactactgaaccataattaaatgtgagtgcacataaagcagcattttttttt-gcaaat 859

                       
Query: 661 atgcattgtata 672
           ||||||||||||
Sbjct: 860 atgcattgtata 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1075
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1065
Effective search space:   709290
Effective search space used:   709290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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