Query= MSMg01no519_f12.b1 MSMg01no519_f12.b1 CHROMAT_FILE:
MSMg01no519_f12.b1 PHD_FILE: MSMg01no519_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:02 2005
(592 letters)
>mm_chr16_40027646_40028637
Length = 992
Score = 996 bits (515), Expect = 0.0
Identities = 560/575 (97%)
Strand = Plus / Plus
Query: 5 gaattcagtattttacccattgttgagtaggcactgatttcatgccttgcccatttattt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtattttacccattgttgagtaggcactgatttcatgccttgcccatttattt 264
Query: 65 agaatctattttccattacatttttattcaaaacttttccatatatttagttttcctact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaatctattttccattacatttttattcaaaacttttccatatatttagttttcctact 324
Query: 125 acttcaagctgtttagtacggtattagaaatgcattttctgtgaccattatttgccttca 184
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 atttcaagctgtttagtacggtattagaaatgcattttctgcgaccattatttgccttca 384
Query: 185 gctgtgagaaatggattcagatgctctgtaataaactgttgttttcattaaatgctgact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctgtgagaaatggattcagatgctctgtaataaactgttgttttcattaaatgctgact 444
Query: 245 aagagtgcatgatggtgatgcaataagagaaattgcattgcagtgatcagagtcaaaaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagagtgcatgatggtgatgcaataagagaaattgcattgcagtgatcagagtcaaaaga 504
Query: 305 cagactaacagaatgaaggcatgcctacctgcacccaagtagctactgcctagaaaatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagactaacagaatgaaggcatgcctacctgcacccaagtagctactgcctagaaaatga 564
Query: 365 tagttccaagacccagggaagaaggcttgacagctaattaatcaaggtaattgatgggag 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagttccaagacccagggaagaaggcttgacagctaattaatcaaggtaattgatgggaa 624
Query: 425 aggctggaccaaggtaggtttactaaagacacttttcactgttgaaagctagatagacac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggctggaccaaggtaggtttactaaagacacttttcactgttgaaagctagatagacac 684
Query: 485 acacacacacacacacacacacagagagagagagagagagagagagagagagagagagag 544
||||||||||||||||||||||| | | | | | | | | | | | ||||||||||||||
Sbjct: 685 acacacacacacacacacacacacacacacacacacacacacacacagagagagagagag 744
Query: 545 agagagagagagagagagagagagagagagagaga 579
|||||||||||||||||||||||||||||||||||
Sbjct: 745 agagagagagagagagagagagagagagagagaga 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_f12.g1 MSMg01no519_f12.g1 CHROMAT_FILE:
MSMg01no519_f12.g1 PHD_FILE: MSMg01no519_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:02 2005
(554 letters)
>mm_chr16_40043339_40044295
Length = 957
Score = 971 bits (502), Expect = 0.0
Identities = 537/552 (97%), Gaps = 9/552 (1%)
Strand = Plus / Minus
Query: 1 tcttctaataccatgatgggtcaggaagaactcactaacaagttcagtatttttaaaag- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tcttctaataccatgatgggtcaggaagaactcactaacaagttcagtatttttaaaagt 690
Query: 60 --ttatagtttttttttctgcaaagcgatcccagaattgtaaaagccatggatccacaaa 117
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tattatag-ttttttttctgcaaagcgatcccagaattgtaaaagccatggatccacaaa 631
Query: 118 atagaccctgttctaaagtatatttaaaaaaa---taaaaagaaaaaagaggcacatgat 174
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 630 atagaccctgttctaaagtata--taaaaaaaaagtaaaaagaaaaaagaggcacatgat 573
Query: 175 aaaaacacataaagtaagaaattagtattagccatgcatagaaagtcgatgtcttccatt 234
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaaaatacataaagtaagaaattagtattagccatgcatagaaagtcgatgtcttccatt 513
Query: 235 gaggttgactattttattaataaaaatgtcacacaatctaaagtagactataatttattg 294
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaggttgactcttttattaataaaaatgtcacacaatctaaagtagactataatttattg 453
Query: 295 tcacattttctttcattactttttcagtgatagcttatgcagaaagaattgcctcattaa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcacattttctttcattactttttcagtgatagcttatgcagaaagaattgcctcattaa 393
Query: 355 taactttgaccaattgctttgcaacatgatgattatttttaccttttgcatttgacaaag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 taactttgaccaattgctttgcaacatgatgattatttttaccttttgcatttgacaaag 333
Query: 415 cttagaaacagaaaatatcattcttttaaaagagtgataagttagttttaataataagtc 474
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cttagaaatagaaaatatcattcttttaaaagagtgataagttagttttaataataagtc 273
Query: 475 aactgtgggacataaataaaaatcagtacatttctctttgggcagaaacacaccctgcat 534
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 272 aactgtggaacataaataaaaatcagtacatttctctttgggcagaaacacaccctgtat 213
Query: 535 gatttcatcaca 546
|||||||||||
Sbjct: 212 aatttcatcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 957
Length adjustment: 10
Effective length of query: 544
Effective length of database: 947
Effective search space: 515168
Effective search space used: 515168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
