BAC Information

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BAC

Clone NameMSMg01-519N18
Chromosome16 (Build37)
Map Location 24,580,364 - 24,744,965
singlet/doubletdoublet
Overlap geneLpp
Upstream geneRtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, A730098P11Rik
Downstream gene5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519N18.T7 (MSMg01no519_n18.b1)MSMg01-519N18.TJ (MSMg01no519_n18.g1)
ACCAG591030AG591031
length787777
length of high quality
(start - end)		585 (36 - 620)541 (66 - 606)
definitionCHROMAT_FILE: MSMg01no519_n18.b1 PHD_FILE: MSMg01no519_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:42 2005CHROMAT_FILE: MSMg01no519_n18.g1 PHD_FILE: MSMg01no519_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,744,384 - 24,744,965)(24,580,364 - 24,580,901)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTATC
TGAGCACTTAGTAAGTAGAAATATCAGAGAAGATCAATACCAGGTATGAA
ACTACATTTGTTTAATACATACAAGATTTCAGTGGTATGGAACTTCATAC
ATGATGCTCTTAGAGGCCATGGGTCTAGTTAACAGAATGCAGCTCTAAGG
ATCTAGTAACAGGAGATTACACATGCACCATAAGCCTGAGGTGAAGGAGT
CCTCTAGCTTGCCATAGTCCTGCCATCCCACTGAATTTCCCCACCAGTGG
CCAGCTCTTGCTTCACACTCTGGATGTGCTAAATGACTATGCAGAAGCAC
AAATGAACACATACACACAATCACACATACATGTAATATACAACATCTCT
CTTGCTCGTTCACTCTCTGTGTGTATGTATATATTAAAGAGCAACACAAC
CTTCAAATACTATCATATAACAGTCATATGTTTATCAGATTCCTTTTGAA
ATATACTTAGCTACATAAGGGGTATTACAGGTACTACTATCAATTAAGGG
AGCCTTTTAGTACTAAAGACCTAAAGAAATTGTTTTTGCTCATGTACAAC
AGTGTCGCGTAATGTACAAGAAAAGAGACATTGCTCATAGTACATGGAGG
AAAAAAAACCTCTAAAATATCAACTACNATAACCAAAAGAAAATGAAGCC
TGATAATGCTTTTGTAAGTAGCAAAAATTTTCATCCNTTNCAACTGTGAT
ATAATTTTTTANCACACTTTAAAGTATGACTTTTCAN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTATGGTCTGAAGTTGGAGAAACTAACTTTTAAA
AATTTATTTTATTTATTTTTAGATGAGATCAACCATGACCACTTTCTACT
TCCTTAAAGACTGAACTATTGTAATTGTGTGTATGCAGCTGTACCTATAT
CCATTTCTATATGTATATCTAGGTATCTCATGTTTCAGAATGTTTCAGTG
GACACTGGGTTGACTTTGTGTCCATTACAATCATTACAGGCATGTCTTTG
AAGGCTTCTTTCTCTTATAAGAACAGGTGTGGTGCTGAGGTTCAGCTGAT
ATTATTCACTTTGTTCTTTTTTGCTCACCTGGGAGCCACTATTGGCCCCC
TGTTTTGCAGGCTTTGGGGAAGGCTTGCAATCCCACCAACAATGGAGGAG
TGTTTCTCTTTCTCCACATCCTCCACAGCATCTGTTGTCACCTGAATTTT
TGATCTTAGCCATTCTGATTGGTTTGAGATGGAATCTCAGGGTTGTTTTG
ATTTGCATTTCCCTAATGATTAAGGATGCTGAACATTTTTTCAGGTGCTT
CTCAGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTTAGCTCTGAGC
CCCATTTTTTAATGGNGTTATTTGATTTTCTAGAGTCCACCTTCTTGAGT
TCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGAAAGGAAAG
ATCTTTTCCCCATCTTGTGTGCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_n18.b1 MSMg01no519_n18.b1 CHROMAT_FILE:
MSMg01no519_n18.b1 PHD_FILE: MSMg01no519_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:42 2005
         (585 letters)



>mm_chr16_24744181_24745165
          Length = 985

 Score = 1102 bits (570), Expect = 0.0
 Identities = 579/582 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctatctgagcacttagtaagtagaaatatcagagaagatcaataccaggtatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ggaattcctatctgagcacttagtaagtagaaatatcagagaagatcaataccaggtatg 726

                                                                       
Query: 64  aaactacatttgtttaatacatacaagatttcagtggtatggaacttcatacatgatgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aaactacatttgtttaatacatacaagatttcagtggtatggaacttcatacatgatgct 666

                                                                       
Query: 124 cttagaggccatgggtctagttaacagaatgcagctctaaggatctagtaacaggagatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cttagaggccatgggtctagttaacagaatgcagctctaaggatctagtaacaggagatt 606

                                                                       
Query: 184 acacatgcaccataagcctgaggtgaaggagtcctctagcttgccatagtcctgccatcc 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 605 acacatgcaccataagcctgaggtgaaggagtcctctagcttgccatagtcctgtcatcc 546

                                                                       
Query: 244 cactgaatttccccaccagtggccagctcttgcttcacactctggatgtgctaaatgact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cactgaatttccccaccagtggccagctcttgcttcacactctggatgtgctaaatgact 486

                                                                       
Query: 304 atgcagaagcacaaatgaacacatacacacaatcacacatacatgtaatatacaacatct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atgcagaagcacaaatgaacacatacacacaatcacacatacatgtaatatacaacatct 426

                                                                       
Query: 364 ctcttgctcgttcactctctgtgtgtatgtatatattaaagagcaacacaaccttcaaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctcttgctcgttcactctctgtgtgtatgtatatattaaagagcaacacaaccttcaaat 366

                                                                       
Query: 424 actatcatataacagtcatatgtttatcagattccttttgaaatatacttagctacataa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 actatcatataacagtcatatgtttatcagattccttttgaaatatacttagctacataa 306

                                                                       
Query: 484 ggggtattacaggtactactatcaattaagggagccttttagtactaaagacctaaagaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 305 ggggtattacaggtactactatcaattaagggagccttttagtactaaaaacctaaagaa 246

                                                     
Query: 544 attgtttttgctcatgtacaacagtgtcgcgtaatgtacaag 585
           |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 245 attgtttttgcttatgtacaacagtgtcgcgtaatgtacaag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no519_n18.g1 MSMg01no519_n18.g1 CHROMAT_FILE:
MSMg01no519_n18.g1 PHD_FILE: MSMg01no519_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:42 2005
         (541 letters)



>mm_chr16_24580161_24581101
          Length = 941

 Score = 1002 bits (518), Expect = 0.0
 Identities = 533/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   atggtctgaagttggagaaactaacttttaaaaatttattttatttatttttagatgaga 63
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 atggtctgaagttggagaaactaacttttaaaattttattttatttatttttagatgaga 263

                                                                       
Query: 64  tcaaccatgaccactttctacttccttaaagactgaactattgtaattgtgtgtatgcag 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 tcaaccatgaccactttctacttccttaaagactgaactattataattgtgtgtatgcag 323

                                                                       
Query: 124 ctgtacctatatccatttctatatgtatatctaggtatctcatgtttcagaatgtttcag 183
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 ctgtacctatatccatttctatatgtatatctagctatctcatgtttcagaatgtttcag 383

                                                                       
Query: 184 tggacactgggttgactttgtgtccattacaatcattacaggcatgtctttgaaggcttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggacactgggttgactttgtgtccattacaatcattacaggcatgtctttgaaggcttc 443

                                                                       
Query: 244 tttctcttataagaacaggtgtggtgctgaggttcagctgatattattcactttgttctt 303
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttctcctataagaacaggtgtggtgctgaggttcagctgatattattcactttgttctt 503

                                                                       
Query: 304 ttttgctcacctgggagccactattggccccctgttttgcaggctttggggaaggcttgc 363
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttggtcacctgggagccactattggccccctgttttgcaggctttggggaaggcttgc 563

                                                                       
Query: 364 aatcccaccaacaatggaggagtgtttctctttctccacatcctccacagcatctgttgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatcccaccaacaatggaggagtgtttctctttctccacatcctccacagcatctgttgt 623

                                                                       
Query: 424 cacctgaatttttgatcttagccattctgattggtttgagatggaatctcagggttgttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cacctgaatttttgatcttagccattctgattggtttgagatggaatctcagggttgttt 683

                                                                     
Query: 484 tgatttgcatttccctaatgattaaggatgctgaacattttttcaggtgcttctcagc 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgatttgcatttccctaatgattaaggatgctgaacattttttcaggtgcttctcagc 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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