Query= MSMg01no520_l16.b1 MSMg01no520_l16.b1 CHROMAT_FILE:
MSMg01no520_l16.b1 PHD_FILE: MSMg01no520_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:51 2005
(610 letters)
>mm_chr16_16888262_16889274
Length = 1013
Score = 1046 bits (541), Expect = 0.0
Identities = 599/635 (94%), Gaps = 29/635 (4%)
Strand = Plus / Plus
Query: 5 gaattctggtctgggcctgcttctccccagggcctaggtacctaaagtgaatcctgacag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gaattctggtctgggcctgcttctccccagggcctaggtacctaaagtgaatcctgacag 238
Query: 65 tagccatggcctgtggctgaagtcccatt-gatgaagcttttcacacttgtgacttgtag 123
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 239 tagccatggcctgtggctgaggtcccatttgatgaagcttttcacacttgtgacttgtag 298
Query: 124 tagcttgtgtactgttctggacctagtgaccaatgtgctcttcaatttgggacagtgaac 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 299 tagcttgtgtactgttctggacctagtgaccaatatgctcttcaatttgggacagtgaac 358
Query: 184 agagtttgtgtgtgacctctgaacaggagagtgagggcagtgctgctgatcaaggtccat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agagtttgtgtgtgacctctgaacaggagagtgagggcagtgctgctgatcaaggtccat 418
Query: 244 ggggcagtatcaaaaaaaa--ggctttactacctgggcataagttcaaggccagcctagg 301
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct: 419 ggggcagtatcaaaaaaaaaaggctttactacctgggcataagctcaaggccagcctggg 478
Query: 302 ctct-----------------------atatatatctgactatagcagccataccggacc 338
|||| ||||||||||||||||||||||||||||||| |
Sbjct: 479 ctctgaagtgagactctccctttaaatatatatatctgactatagcagccataccggaac 538
Query: 339 gcttgtatgtgcaaactgccatgatccaggccaattccttggcaatgagctgtggaacct 398
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcttgtatgtgcaaactgccatgatccaggccaattccttggcaatgagctgtggaacct 598
Query: 399 ctgaaggttccttaacccccaatgccagtatcttcccctgtaaaccctgcccaggtaccc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctgaaggttccttaacccccaatgccagtatcttcccctgtaaaccctgcccaggtaccc 658
Query: 459 acagaaagctaagtgtccctctgccagcactacaagtgtgcatgcatgcagggctgagtt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 acagaaagctaagtgtccctctgccagcactacaagtgtgcatgcatgcagggctgagtt 718
Query: 519 ccttttcacacctctgacatcgcacagcagatgcatcacctttcacttttccttctct-- 576
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 719 ccttttcacacctctgacatcacacagcagatgcatcacctttcacttttccttctctgc 778
Query: 577 -aagctgcatccctggagtgagaagcatgccttgg 610
||||||||||||||||||||||||||||||||||
Sbjct: 779 caagctgcatccctggagtgagaagcatgccttgg 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1013
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1003
Effective search space: 601800
Effective search space used: 601800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_l16.g1 MSMg01no520_l16.g1 CHROMAT_FILE:
MSMg01no520_l16.g1 PHD_FILE: MSMg01no520_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:51 2005
(634 letters)
>mm_chr16_17063766_17064799
Length = 1034
Score = 758 bits (392), Expect = 0.0
Identities = 415/428 (96%), Gaps = 10/428 (2%)
Strand = Plus / Minus
Query: 1 aatatggaacctataacaacagcaaaaaaaaaaaaaaaaaaaaaaaaggtagttcctgat 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 418 aatatggaacctataacaacagcaaaaaaaaaaaaaaaaa--------gtagttcctgat 367
Query: 61 aagaaaattcctcaaaaaaacttgaggaatttgaacggcagcccacagagatgcagtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aagaaaattcctcaaaaaaacttgaggaatttgaacggcagcccacagagatgcagtgca 307
Query: 121 ctgggttgtgagtacagattatttggtaccatcttacagcagagtcatacaatagtttat 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctgggttgcgagtacagattatttggtaccatcttacagcagagtcatacaatagtttat 247
Query: 181 gtgtttcattttgtagagtttgaaaatttaaaatacacacacacacacatacatatatgt 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 246 gtgtttcattttgtagagtttgaaaatttaaaat--acacacacacacatacatatatgt 189
Query: 241 tgatatacatacaaccaatacatattcagaattccaatgggcttttgccttgaattctga 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tgatatacatacaaccaatacgtattcagaattccaatgggcttttgccttgaattctga 129
Query: 301 aaagaaagattctgagattgcacatttattagagatggtggctaccttagagatgccctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 128 aaagaaagattctgagattgcacatttattagagatggtggctaccttagagatgccttt 69
Query: 361 gaaaactgaagctggccatgctccaaattgtgtatccaaaaaaatgcaacaattttctag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gaaaactgaagctggccatgctccaaattgtgtatccaaaaaaatgcaacaattttctag 9
Query: 421 acattata 428
||||||||
Sbjct: 8 acattata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
