BAC Information

Click to search

BAC

Clone NameMSMg01-521A14
Chromosome16 (Build37)
Map Location 86,109,806 - 86,110,098
singlet/doubletsinglet
Overlap genenone
Upstream geneApp, Cyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025
Downstream geneLOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521A14.T7 (MSMg01no521_a14.b1)MSMg01-521A14.TJ (MSMg01no521_a14.g1)
ACCAG591925AG591926
length744779
length of high quality
(start - end)
504 (66 - 569)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no521_a14.b1 PHD_FILE: MSMg01no521_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:15 2005CHROMAT_FILE: MSMg01no521_a14.g1 PHD_FILE: MSMg01no521_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CCCAATCACAAAAGAACTCACACAATATGTATTCACTGATAAGTGGATAT
TAGCCCAGAAACTTAGGATACCCAAGATATAAGACACAATTTGCTAAACG
CATGAAACTCAAGAAGAATGAAGACCAAAGTGTGGACACTTTGCCCCTTC
TTAGAATTGGGAACAAAACACCCATGGAAGAAGTTACAGAGACACAGTTT
AGAGCTGAGACGAAAGGATGGACCATCTAGAGACTACCATATGCAGGGAT
CCATCCCATAATCAGCCTCCAGACGCTGACACCATTTCACACACTAGCAA
GATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTGTGCCG
GGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAT
CATAAGGTCCCCAATGGAGGAGCTATGATAAAGTAACCAAGGAGCTAAAG
GGATCTGCAACCCTATAGGTGGAACAACATTATGAACTACCCAGTATCCC
CCAGAGCTCGTGTCTCTAGCTGCATATGTATCAGATGATGGCCCAGTTGG
CCATCAGTGGAAAGAGAGGCCCATTTGTCTTGCAAACTTTTTCN
TTTCCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCCCCGAAATTCAAATGAATGATTCTGTCTCTGT
ATCTAAAATGGAGAGAACTCAAGGAAGATAAGAAACATCAACATACACAC
ATTCATATAAGAATGTATATATCTGTACAATATAAACATGCATATACACA
CTCATATTCTACACATGCATACATGCACACACTCAAAAATGGTGTATGTT
TGAAACTAAAATATACCTAATCATGCTGTATTTTATCTAAAATATTCTTC
TCCCCTTTTATAGAATGTGTGTCATAGATTTATTTGAAATTAGCTGCGTG
TTATTTTAAAAGACGAATATACAAATAATTTTTGCTCTAAGTATAGAGTT
TACATTAGGGAAACCATACTGGGTGAGATTGAGTCTGAATTATACAAAGT
GAAACTCCATCTTTCTTTTGCTGAACCTCTACCAAGTTGGGCATCCACCC
CCTCTTCTTCCAAAAGAAAATATTTCACAACTTTTTTGAAAACAGACCAA
ATTCTAGTGACCTTTCTAAAATAATTTGAATTACGGAAACTTATTTTTAT
TTTTCCCTGAATCTATGATATTTCCCCTAACCCAAATTATTTTTCCTTCG
ATGTCCTGAACCGAAATTTTTTTACATTGTGAAACATTGATAAGAGACCC
TCGAATGTGAAAGAATGTTGTTGTCGCCCAACTCTATTTCTCCTCACACT
TGGCAAGCTTTGTTTCTCGCCTTAGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_a14.g1 MSMg01no521_a14.g1 CHROMAT_FILE:
MSMg01no521_a14.g1 PHD_FILE: MSMg01no521_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:15 2005
         (292 letters)



>mm_chr16_86109447_86110138
          Length = 692

 Score =  505 bits (261), Expect = e-147
 Identities = 285/293 (97%), Gaps = 1/293 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcaaatgaatgattctgtctctgtatct-aaaatggagagaactcaaggaagataag 59
           |||| ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||  
Sbjct: 652 aattgaaatgaatgattctgcctctgtatctaaaaatggagagaaatcaaggaagatacc 593

                                                                       
Query: 60  aaacatcaacatacacacattcatataagaatgtatatatctgtacaatataaacatgca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaacatcaacatacacacattcatataagaatgtatatatctgtacaatataaacatgca 533

                                                                       
Query: 120 tatacacactcatattctacacatgcatacatgcacacactcaaaaatggtgtatgtttg 179
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 532 tatacacactcatattctacacatgtatacatgcacacactcaaaaatggtgtatgtttg 473

                                                                       
Query: 180 aaactaaaatatacctaatcatgctgtattttatctaaaatattcttctccccttttata 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaactaaaatatacctaatcatgctgtattttatctaaaatattcttctccccttttata 413

                                                                
Query: 240 gaatgtgtgtcatagatttatttgaaattagctgcgtgttattttaaaagacg 292
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaatgtgtgtcaaagatttatttgaaattagctgcgtgttattttaaaagacg 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)