BAC Information

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BAC

Clone NameMSMg01-524B05
Chromosome16 (Build37)
Map Location 61,106,368 - 61,106,967
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524B05.T7 (MSMg01no524_b05.b1)MSMg01-524B05.TJ (MSMg01no524_b05.g1)
ACCAG594239AG594240
length767767
length of high quality
(start - end)
687 (34 - 720)600 (64 - 663)
definitionCHROMAT_FILE: MSMg01no524_b05.b1 PHD_FILE: MSMg01no524_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:13 2005CHROMAT_FILE: MSMg01no524_b05.g1 PHD_FILE: MSMg01no524_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGTTG
TAGGCCAATCAAGGCCAATTGTGCTACCAAGGCAGGGTAATAAGACAAGA
TTTTTGCAGGTGAAATCTTGGGATGTATCCATAGCAAAGGGAAACCCTGC
CAGAGGACTCCAGAAGGCTGGTTCTCAGAGGGCAGGATGTACAAAATAAT
AGGACTGAACAGATCTCTTCTCTTTAATGCTGCTGTTTGAATACCCTTTT
TGACCAACTTTAACACTAAGCGGGCAGAATCAGTAAGCTGCTGGGGAGAA
TTTAATTCTATATCTCCCAGTAAAATATCATATAATGGTTGTAATTGTTT
GTTGGTTAGGCCCAAATAGGGACATACCCACTGTATATACCCCAATAGCT
TTTGAAAAATCATTCAATGTCCTCAAATTATTCGTTCGAATCTGAATTTT
CTGGGGAGATACTTGACTATCAAAAATTTTAGTTCCTAAATAATTCACCA
CTTTTCCTTTCTGAACCTTTTCTGAAACTACAACTAATTGCTTTTCTTTT
AATTTTTGGATCACTACACTATATGCGTGTGTAACTTTAATTGTCTCACT
CTGAGAACCTCAGTAGTCCCTAATCTGGGAACCTAATAGTATCTAACTGA
GAACTTGAATCGTCCCACTTACCTGGGAGCTTTCCAGCTGGCTACCCTGA
CTGCCGAGAGTTCTGGACTCGTCCCCATACAGGTTCCACCACTTGTAGCT
ACCTTCTCTGNACAGCN
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTGACAAATGGAGATTCCCCACAGATACTTAAAAG
AACAGCCAAGTTACACTCATGCAAGAATTTATCAGGACCTAGAAAATAGG
GGGGTTATGGGATTGCATTATTCATGAGAAGGTCTGCTAGAGCAGAACCC
TCTGCTGCTAGCTTTCACAAGGCTCAAGGGAGTAGCACAAATTGTGACTA
GGGTGTGAAATCCTTACCTGTCATTAGCTGACCCTAGGCAGGGCTGTTTT
ATCTTTACTGTAAATATTACTTGGTTCCTGTAAGTCCTTTTGAAGTCATT
CCTTTGTTTTATGTCAGGTAACTTCAATGTACTTTGCCTGCTGTGACATC
CTAACCCTTTGTTTTCTGTATTATATAAGACTGGTGTTCACTTTATGAAA
ATACACTCAGATTCTACACACTCTCTCTTGTCACTTCTGTTTGTCATTCT
CCAACTCTTTGCCCACCTGCAACTAGAGACCCATTCTGTGCAGATAGGAG
ACCCAAAAAAGGGGGATAGTCTGTCGCACAAGAGATCTATTCAAAAACTG
CCACCAGCAGTCAGAATTGACTCAACCAAACAGGCGTTTGTTTGTAAGGT
AACTAACTGTAGTAGCAGAGCTGCCCTGTCTGTTCAGCCTCATGATGCCA
ACTCTCGATGCTTGCAGGTGCTTCTTCATGGCATAAACTAAGAAATACCT
TCTGGGTGGGACAGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_b05.g1 MSMg01no524_b05.g1 CHROMAT_FILE:
MSMg01no524_b05.g1 PHD_FILE: MSMg01no524_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:13 2005
         (600 letters)



>mm_chr16_61106168_61107167
          Length = 1000

 Score = 1145 bits (592), Expect = 0.0
 Identities = 598/600 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgacaaatggagattccccacagatacttaaaagaacagccaagttacactcatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgacaaatggagattccccacagatacttaaaagaacagccaagttacactcatgca 260

                                                                       
Query: 61  agaatttatcaggacctagaaaataggggggttatgggattgcattattcatgagaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatttatcaggacctagaaaataggggggttatgggattgcattattcatgagaaggt 320

                                                                       
Query: 121 ctgctagagcagaaccctctgctgctagctttcacaaggctcaagggagtagcacaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctagagcagaaccctctgctgctagctttcacaaggctcaagggagtagcacaaatt 380

                                                                       
Query: 181 gtgactagggtgtgaaatccttacctgtcattagctgaccctaggcagggctgttttatc 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgactagggtatgaaatccttacctgtcattagctgaccctaggcagggctgttttatc 440

                                                                       
Query: 241 tttactgtaaatattacttggttcctgtaagtccttttgaagtcattcctttgttttatg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttactataaatattacttggttcctgtaagtccttttgaagtcattcctttgttttatg 500

                                                                       
Query: 301 tcaggtaacttcaatgtactttgcctgctgtgacatcctaaccctttgttttctgtatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaggtaacttcaatgtactttgcctgctgtgacatcctaaccctttgttttctgtatta 560

                                                                       
Query: 361 tataagactggtgttcactttatgaaaatacactcagattctacacactctctcttgtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tataagactggtgttcactttatgaaaatacactcagattctacacactctctcttgtca 620

                                                                       
Query: 421 cttctgtttgtcattctccaactctttgcccacctgcaactagagacccattctgtgcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttctgtttgtcattctccaactctttgcccacctgcaactagagacccattctgtgcag 680

                                                                       
Query: 481 ataggagacccaaaaaagggggatagtctgtcgcacaagagatctattcaaaaactgcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataggagacccaaaaaagggggatagtctgtcgcacaagagatctattcaaaaactgcca 740

                                                                       
Query: 541 ccagcagtcagaattgactcaaccaaacaggcgtttgtttgtaaggtaactaactgtagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccagcagtcagaattgactcaaccaaacaggcgtttgtttgtaaggtaactaactgtagt 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)