BAC Information

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BAC

Clone NameMSMg01-524H23
Chromosome16 (Build37)
Map Location 64,874,772 - 64,875,326
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043540, Ckt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1
Downstream geneLOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b, EG383186, Vgll3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524H23.T7 (MSMg01no524_h23.b1)MSMg01-524H23.TJ (MSMg01no524_h23.g1)
ACCAG594561AG594562
length763763
length of high quality
(start - end)
604 (41 - 644)540 (72 - 611)
definitionCHROMAT_FILE: MSMg01no524_h23.b1 PHD_FILE: MSMg01no524_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:48 2005CHROMAT_FILE: MSMg01no524_h23.g1 PHD_FILE: MSMg01no524_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTTAGTTCTGTACCCCGTTTTTTTTTCCATTTTTTATTAGGTATTT
AACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCA
CCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCC
TGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGT
GATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGC
TCCGGGGTACTGGTTAGCTCATGATGTTGTTCCACCTATAGGGTTGCAGA
TCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTA
TGATCCATCCATTAGCTGTCTGTGAGCATCCACTTCTGTGTTTGCTGGGC
CCCGGCATAGTCTCACAAGAGACAGCTACATCTGCGTCCTTTCAATAAAA
TCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGT
GGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGCT
CCAAACTCCGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAAATCT
AANGAGGGGCATAGTGTCCACACTTCAGTCTTCATTCTTCTTGAGTTTCA
TGTGGTTAGCNAATATATCTTATATCTTGGGTATCCTAGGTTTGGGGCTA
TATCCACATATCN
TGATGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTGAAATAAATAAAAGTAAAAGCTAAA
GGTGGTATATGGATTTTAGGGTTTTGATTATTTAATTATTTACGTTTTAT
GCGTGCAACAACCCTATGGCTATTGGACACAGAAATAAAAGAAACAAACA
CTCAGAGCTTAGTGACTTTCTCAATCACCAGGAAAAAGTTTGAGGCATAT
CCTAAATGTGCTTAACCCTGAGTTGGTACACACTAAGAAGGTTTAATTTG
TTCATGGTTGAGCTGGCTGTTATTAGTTCCGTGGGACACCGTATTGATTA
GATTGTATCTTCGTTGTACCCATGGCTACCTGATCCATTTCCAGTTTGCT
TTTAGTAACTAGGAAAAAAAAAAAAACCTATCAGTATTTTCCCAACTATT
CAACATTGACTCGTCTAGGTGTCTTTAAAAATAAAAAAATATCTGTCTAT
TTGTCATAAGTAAATGTAGTACACACCTTTGATCCAAAATAGTAATGCCT
AGTTGAGGTGCAGACCAAGTGATGACTCGGAGAAAGAGTTGAGAGAATGA
GTCAGAAATAAGATCCGCCAGGCAGAGGTGGTGGACTTTAATCCCAGCAT
TTGGTAGGCAGAGGCAAGTGGATCTCTGAGTTTGAGGTCCCCCTGTCTAC
AGAGTGAGTTCCGGACAGCAGGGAACATGGAGAAACCTGTCTAAACAAAA
TGAGTTCAGGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_h23.g1 MSMg01no524_h23.g1 CHROMAT_FILE:
MSMg01no524_h23.g1 PHD_FILE: MSMg01no524_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:48 2005
         (540 letters)



>mm_chr16_64874586_64875526
          Length = 941

 Score = 1011 bits (523), Expect = 0.0
 Identities = 540/555 (97%), Gaps = 15/555 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgaaataaataaaagtaaaagctaaaggtggtatatggattttagggttttgattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cactgaaataaataaaagtaaaagctaaaggtggtatatggattttagggttttgattat 246

                                                                       
Query: 61  ttaattatttacgttttatgcgtgcaacaaccctatggctattggacacagaaataaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttaattatttacgttttatgcgtgcaacaaccctatggctattggacacagaaataaaag 306

                                                                       
Query: 121 aaacaaacactcagagcttagtgactttctcaatcaccaggaaaaagtttgaggcatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aaacaaacactcagagcttagtgactttctcaatcaccaggaaaaagtttgaggcatatc 366

                                                                       
Query: 181 ctaaatgtgcttaaccctgagttggtacacactaagaaggtttaatttgttcatggttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctaaatgtgcttaaccctgagttggtacacactaagaaggtttaatttgttcatggttga 426

                                                                       
Query: 241 gctggctgttattagttccgtgggacaccgtattgattagattgtatcttcgttgtaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gctggctgttattagttccgtgggacaccgtattgattagattgtatcttcgttgtaccc 486

                                                                       
Query: 301 atggctacctgatccatttccagtttgcttttagtaactaggaaaaaaaaaaaaa----- 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 487 atggctacctgatccatttccagtttgcttttagtaactaggaaaaaaaaaaaaaaaaaa 546

                                                                       
Query: 356 ----------cctatcagtattttcccaactattcaacattgactcgtctaggtgtcttt 405
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aaaaaaaacacctatcagtattttcccaactattcaacattgactcgtctaggtgtcttt 606

                                                                       
Query: 406 aaaaataaaaaaatatctgtctatttgtcataagtaaatgtagtacacacctttgatcca 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aaaaataaaaaaatatctgtctatttgtcataagtaaatgtagtacacacctttgatcca 666

                                                                       
Query: 466 aaatagtaatgcctagttgaggtgcagaccaagtgatgactcggagaaagagttgagaga 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aaatagtaatgcctagttgaggtgcagaccaagtgatgactcggagaaagagttgagaga 726

                          
Query: 526 atgagtcagaaataa 540
           |||||||||||||||
Sbjct: 727 atgagtcagaaataa 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space:   493430
Effective search space used:   493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)