BAC Information

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BAC

Clone NameMSMg01-527C24
Chromosome16 (Build37)
Map Location 73,814,635 - 73,815,244
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527C24.T7 (MSMg01no527_c24.b1)MSMg01-527C24.TJ (MSMg01no527_c24.g1)
ACCAG596600AG596601
length1,439757
length of high quality
(start - end)
---635 (78 - 712)
definitionCHROMAT_FILE: MSMg01no527_c24.b1 PHD_FILE: MSMg01no527_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:21 2005CHROMAT_FILE: MSMg01no527_c24.g1 PHD_FILE: MSMg01no527_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTTTTGTCTGATGGTGGTCTGGTAGTGTGTACCTCATGTGTTACGCGT
ATTGCTAGTAGGAGAGTGGTGTGTGGGTTTGTCCGCCTGTGTCTCTGCGT
GTCTGACGCCGAATGCGTTCTGTACGCTCGCGGGCGAGCATGCTATCGCC
TTGTGGGATCCGTCCTGTACTCTTGAGTTCGTTGTGTGCCAGAAGTCCCA
TCTNATTACTATCTACCAACTGCTCTTTGTCCGCTTCGCTATCACACTTC
GCATACGCATACGTCGCGGCACCGGCGNAGANACGGGAGAGTCGCTACGT
ACGTCTAGATTAGAGTATCACATAGAATTAAANGATCTATGCGCGGTAAG
ATAGATGCGTATGAGTATTCGNTGTCGGGTGCGTAGCGTGTGGATCACGC
GAGAGAGTGTGGCTAGAAGAGTGATAAGATACAATGCGACGTTTAATACT
TNTCTCGCGACCTCAATCACGCGCACATGTGNACGCCATCTCTCTCGCAT
GTATCATATTAATATATAATACGCCGCCGACCGTGTATATCAGCAGACGC
GCTCTGCTATAGTCTCTCGGCGGGCTGCGTGTTTGCGCGCGCGTGGCGCA
GAATGATAGCGTGTCGAGAACGAGTACGACGACAATGTGCACCATTGGTG
ATATGGCGCATAGACTATAGTGAACAGACACAGTAGATGAGTGTAGGTAG
GGTATCAGTGTATATGCGTCGCGCTGGTCGTGCTGTTGTATAGACGGTCT
GGTATCCANCACGTATGATAATCTACTATAACAGATCGCTACTTACATTC
TCCGTGCAGTGCACCCATGCTACGTGATGATATGATTATGGCGCGTGTAN
GCGCTGCGCGCGATACTAATCGGCGGTACCGGGACTATATATCATTAGCT
GCCACGCGACGTCGATATGCATCCAGCTCCNCGGCGTCGTGTTANTAACG
TAGNGCGCGTATAATAACTGAGAANGTCGTATATAGACGCGCGTCAGCCG
TGTCGCGCGATGCAGCTGAGANCACNTNATGAATATAGTGTTTCTCGTCT
CATATAGCTCACGCTATCAGTGCGTCGACGCGCTTCTAGATATGACNATA
CACTATTCTCGCTCANCGCTNTCTGCTATATAAANGTTCGCTGTGTGCGN
TGCTCGCGCCTTATATATCGCTCCTTCTCGATCTCACAGTACACAATATA
CTATTGTGGACTGCGCGGTGCGTCTCGCGCGCCGCATACAAAAANCAGAA
CGCGCATAAGACACTTTCACACAACCCNATTCATTTANAACCTTTTGGCT
TGTACAGCANNTGAACGAACGTNTAATNNTCTCCTGTCTCCCCCGCCNTG
CACTCAACTTNATTTTNCTACACATCTATTCTTATAATNCGAAAAGATNT
GTCTTCTGTCAATCACATATTTTAAACACACAATATTTG
ACGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTATCATGACCCAAAGGAGA
CCTTGTTCAATTTCTTTCTAAAATAATTTAAAGTAAACCCTTTATAATAA
AACATGTAGGTATATATCAAAAAGATTTTTGTAAAATAAGAAACATCTGA
AAAAATTATCTACAATTGTTATCAATTCATATATAAAAATATAAAACATT
TTTGAGTGATGAAAATATTTATATGTCATATAAATGTTATACCTAAAACC
AAATCTTAATATAAAACAAAGCATCTTTTCTTTTCTTACACCTTGTCTTA
TAAAGATTTAAACATGTATTAACATAGTTGGAATATAAAATAAAGAAGGC
CAGCTTGATAAATGATTAACATTACTGTTATTTCAGAATTTTCAAATGAC
GTCATTTTAGGACCTAATCACCTCATAAATCAGGTGTCCTTCCTATGGAC
ATTTATAACGTAAGAATCAAAGAAATGAAGCAACATGCTTAAGGCTTTGA
TCTAAATGGATATAATGTGATTAGAATTAAAAGGATAACCTGATTTTCAT
TCAAACATGAATGAAAATACATCACTCAAGTAAAAATATCTTTCCTCACA
TCCTACCAATCTATAAATTTTTCCACTGGTGTGACATAAAAACAATTTTC
TGAGCCGGGCAGTGGTGGTGCACACCTTTAATCTAATCACTTGGGAGGCA
GAAGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_c24.g1 MSMg01no527_c24.g1 CHROMAT_FILE:
MSMg01no527_c24.g1 PHD_FILE: MSMg01no527_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:21 2005
         (635 letters)



>mm_chr16_73814635_73815668
          Length = 1034

 Score = 1096 bits (567), Expect = 0.0
 Identities = 596/611 (97%), Gaps = 10/611 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattatcatgacccaaaggagaccttgttcaatttctttctaaaataatttaaagtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttattatcatgacccaaaggagaccttgttcaatttctttctaaaataatttaaagtaaa 551

                                                                       
Query: 61  ccctttataataaaacatgtaggtatatatcaaaaagatttttgtaaaataagaaacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ccctttataataaaacatgtaggtatatatcaaaaagatttttgtaaaataagaaacatc 491

                                                                       
Query: 121 tgaaaaaattatctacaattgttatcaattcatatataaaaatataaaacatttttgagt 180
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 490 tg-aaaaattatctacaattgttatcaattcatatataaaaatataaaacatttttgaat 432

                                                                       
Query: 181 gatgaaaatatttatatgtcatataaatgttatacctaaaaccaaatcttaatataaaac 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 431 gatgaaaatatttatatgtcatttaaatgttatacctaaaaccaaatcttaatataaaac 372

                                                                       
Query: 241 aaagcatcttttcttttcttacaccttgtcttataaagatttaaacatgtattaacatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaagcatcttttcttttcttacaccttgtcttataaagatttaaacatgtattaacatag 312

                                                                       
Query: 301 ttggaatataaaataaagaaggccagcttgataaatgattaacattactgttatttcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttggaatataaaataaagaaggccagcttgataaatgattaacattactgttatttcaga 252

                                                                       
Query: 361 attttcaaatgacgtcattttaggacctaatcacctcataaatcaggtg---------tc 411
           |||||||||||||||||||||||||||||||||||||||||||||||||         ||
Sbjct: 251 attttcaaatgacgtcattttaggacctaatcacctcataaatcaggtgtcatcgccatc 192

                                                                       
Query: 412 cttcctatggacatttataacgtaagaatcaaagaaatgaagcaacatgcttaaggcttt 471
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 191 cttcctatggacatttataacgtaagcatcaaagaaatgaagcaacatgcttaaggcttt 132

                                                                       
Query: 472 gatctaaatggatataatgtgattagaattaaaaggataacctgattttcattcaaacat 531
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 131 gatctaaatggatataatgtgattagaattaaaaggataacccgattttcattcaaacat 72

                                                                       
Query: 532 gaatgaaaatacatcactcaagtaaaaatatctttcctcacatcctaccaatctataaat 591
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 71  gaatgaaaatacatcactcaagtaaaaatatctttcctcacatcttaccaatctataaat 12

                      
Query: 592 ttttccactgg 602
           |||||||||||
Sbjct: 11  ttttccactgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1034
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1024
Effective search space:   640000
Effective search space used:   640000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)