Query= MSMg01no527_e03.b1 MSMg01no527_e03.b1 CHROMAT_FILE:
MSMg01no527_e03.b1 PHD_FILE: MSMg01no527_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:26 2005
(675 letters)
>mm_chr16_31499538_31500611
Length = 1074
Score = 1220 bits (631), Expect = 0.0
Identities = 662/675 (98%), Gaps = 7/675 (1%)
Strand = Plus / Minus
Query: 4 ggaattcaaggtttcc---cccagaaacaggaccatttcattgattccgttgtaaggaga 60
||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ggaattcaagg---cccagcccagaaacaggaccatttcattgattccgttgtaaggaga 834
Query: 61 aagtggaggggagaaagacctttctccttgccaaccccaggctggaattctgaatcgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 aagtggaggggagaaagacctttctccttgccaaccccaggctggaattctgaatcgcat 774
Query: 121 gcaatcagagaagagcaccctgggtggctctaggctcaccaacacaggcttgggagacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gcaatcagagaagagcaccctgggtggctctaggctcaccaacacaggcttgggagacaa 714
Query: 181 gacagtataattgagcactgtccctgcaagctcgtgggacccaccagtgctcagcctagc 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 713 gacagtataattgagcactgtccctgcatgctcgtgggacccaccagtgctcagcctagc 654
Query: 241 tagatctctgcagtgacatccaggcgtgttctgcattaaatcagagctggtaatttcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tagatctctgcagtgacatccaggcgtgttctgcattaaatcagagctggtaatttcttt 594
Query: 301 cagagggaaacagctctgaaatggcatgaaagacaaaaatctgttccttgaaaaaatgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cagagggaaacagctctgaaatggcatgaaagacaaaaatctgttccttgaaaaaatgac 534
Query: 361 agcatatgggcctgcgctgctgcagaggggcgagaggcttcgcctccctttgttacgctc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 533 agcatatgggcctgcgctgctgcagaggggcgagaggcttcgcctccctttgttacactc 474
Query: 421 atcaagccgctgatgtgaatgtcagattagcaacagaaccatatactaacggcacccaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atcaagccgctgatgtgaatgtcagattagcaacagaaccatatactaacggcacccaaa 414
Query: 481 ttagctgctaacaaggcactccggctcgctccaggcaggcagattgctctgactgtgaga 540
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 413 ttagctgctaacaaggcactctggctcactccaggcaggcagattgctctgactgtgaga 354
Query: 541 gacagaaagcgccttagaaaacagtgcttactgatattctcacatctcaaaaaaaagatc 600
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 353 gacggaaagcgccttagaaaacagtgcttactgatattctcacatctc-aaaaaaagatc 295
Query: 601 actccctgctctcagagaattgccagaggaagatggagcccagcctcctgtctgcctccg 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actccctgctctcagagaattgccagaggaagatggagcccagcctcctgtctgcctcca 235
Query: 661 tgccaggagccaaca 675
|||||||||||||||
Sbjct: 234 tgccaggagccaaca 220
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space: 707560
Effective search space used: 707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_e03.g1 MSMg01no527_e03.g1 CHROMAT_FILE:
MSMg01no527_e03.g1 PHD_FILE: MSMg01no527_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:26 2005
(630 letters)
>mm_chr16_31352336_31353365
Length = 1030
Score = 1156 bits (598), Expect = 0.0
Identities = 619/626 (98%)
Strand = Plus / Plus
Query: 5 agaagcccacctgcctctgcctcctgaatgctggattaaagatgtagatcaccatacctg 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 agaagcccacctgcctctgcctcttgaatgctggattaaagatgtagatcaccatacctg 264
Query: 65 gtgactattttatttatttaagtatgtgtctatttgtgcttctatgcataggtatgtgca 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgactattttatttatttaactatgtgtctatttgtgcttctatgcataggtatgtgca 324
Query: 125 catgaatgcaggttcctgccaaggccaaagggatcagatgcccctagggttagagcgctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgaatgcaggttcctgccaaggccaaagggatcagatgcccctagggttagagcgctg 384
Query: 185 ggcagtcacaagccacccagtaccgggtgctaggaattagactccagccctctgcaacag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcagtcacaagccacccagtaccgggtgctaggaattagactccagccctctgcaacag 444
Query: 245 cagtccagcctcttatttgctaagccgtgtcttcagcccctgggaagccattacttattg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagtccagcctcttatttgctaagccgtgtcttcagcccctgggaagccattacttattg 504
Query: 305 agtgctgttaaataaggtatttcatctcaccacagttatcatgtgaaagatgggttgttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtgctgttaaataaggtatttcatctcaccacagttatcatgtgaaagatgggttgttg 564
Query: 365 atgtagcatttcactgatgtgcagacaaaggctccagaattgaatttttcaaaagtcagt 424
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 gtgtagcatttcactgatgtgcagacaaaggctccagaagtgaatttttcaaaagtcagt 624
Query: 425 cagtcgctggatgaggagttctgttctccctttctcgtcacttccacattgtcatcagat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagtcgctggatgaggagttctgttctccctttctcgtcacttccacattgtcatcagat 684
Query: 485 cacaccaacctgcggtccaggtggcagagtcgctgcttatccaacatgggacttgtggct 544
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 cacaccaacctgcggtccaggtggtagagtcgctgcttatccaacatgggacttgtggct 744
Query: 545 tatgctcatagctttcctggaagaaggttttgacagagatatctgacaagactgaatgag 604
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 745 tatgctcatagctttcctggaagaaggttttgatagagatatctgacaagattgaatgag 804
Query: 605 tcatttactagacaggaagtggctct 630
||||||||||||||||||||||||||
Sbjct: 805 tcatttactagacaggaagtggctct 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
