BAC Information

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BAC

Clone NameMSMg01-528C08
Chromosome16 (Build37)
Map Location 75,265,795 - 75,266,485
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528C08.T7 (MSMg01no528_c08.b1)MSMg01-528C08.TJ (MSMg01no528_c08.g1)
ACCAG597331AG597332
length747783
length of high quality
(start - end)
695 (53 - 747)124 (81 - 204)
definitionCHROMAT_FILE: MSMg01no528_c08.b1 PHD_FILE: MSMg01no528_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:40 2005CHROMAT_FILE: MSMg01no528_c08.g1 PHD_FILE: MSMg01no528_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGCAATGTAACTTTGAATCTTGCCCCAAGATTTATGGA
AAAATGTGTGAAATTCGTAATGAATAACAGCAAAGGACGGAGAGAATGGC
AGAAGGTAATCCCTAAGCAACCATCATCAACCTGAGCACTACAAAAGGCT
GATGATATCTGCACAGTTCTCTCAGTGAGAAAACTTTTGTAGCATAGCGC
TGGCTACTACTGGAATGTTACATTTTCTATGAAATTATGAAATTTTAAAA
ATGTTGAAAGTACAAGGACTTGCCTGAAATTTAATCATAAATTAACCCAA
AATCCCTATGAATGATCTCAATATCAACAAACCACAATTGTCATGTAGTT
TGTCACTAGCCAGTTTTAACATAATTGACACATCTTAACAAGAAAGCATC
TAGAAATATTAATGAGTTAGTAATGCGTTAAAGAATATTAGCTTTTTAAT
TAAAGGTATTTAATTGTCGCATAAAATATTGATCATAAATAATAATGCAA
TTACAATATGGCTATTTCTACATATGTTCATTATATAATATCTATGAAAA
CTGAAATGCAATCATCTTGAACATTTTAAATATTTCTGAGAAACTCTTGG
TTTTTAGCATGTTGAGATACTCACGAGATTCCTGAGATGTGTAATAACTT
TGTAGAGAAACAGCAAAGGTTCTCATTCCTATCTTTAATAAACATAA
AGGCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTGGTATGGGCAATTCT
CCCGGTTACCCTCAGTACAGGTTTATTTTATACCTGCTTCAGTGTGCCTT
TAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GNANNANAANANGCATATTTGTGAAAAANAAAATTCTTTATGTATTTAAA
AGTTTATTTGGTTTAGACGGTGTATGGTAGAGTAAGAGGTTTAGGTCGTT
GTTGTGAATATATAATGTTGTTTTTTTTGTTAAGGTTTATTAATTTTTAT
TATTGTTTGAGTTATGTTTTTCTGGGGTTTTGTTTTTGAATTTAATATTT
ATTTGTAGTGTGTGTTTTTTTAGTGGAATTTAAGAGTTTATTTTTGTTTA
ATTTGTTTTTGTAGTAATTTAAGAAAGAATATTTGTGTTGTGTTATATTT
TGATTATTATTTTTGTAATGGTGATGATATGTTTTTATTATTAGAAGAGT
TATTTTGTTATTGTTTATCTTTATGAATAGTTAAGAGATTTTTTTATTTG
TATAGACATGTTTATTTGTTTACACTATTCCCTATCGTGTTTTTATCAGT
ATGTATATTTTTTTGTTATCTTTTTTGCCAATCTTTCATGCTGTTTTCAT
TTATATTATTAGTTTTTGTTGACATTCTTTTTTTTTGTTATTTTTTGTTC
CCTGGTTGCTTTCCTTATTTGTGTACGTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_c08.b1 MSMg01no528_c08.b1 CHROMAT_FILE:
MSMg01no528_c08.b1 PHD_FILE: MSMg01no528_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:40 2005
         (695 letters)



>mm_chr16_75265591_75266685
          Length = 1095

 Score = 1321 bits (683), Expect = 0.0
 Identities = 689/691 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcaatgtaactttgaatcttgccccaagatttatggaaaaatgtgtgaaattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcaatgtaactttgaatcttgccccaagatttatggaaaaatgtgtgaaattc 264

                                                                       
Query: 65  gtaatgaataacagcaaaggacggagagaatggcagaaggtaatccctaagcaaccatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaatgaataacagcaaaggacggagagaatggcagaaggtaatccctaagcaaccatca 324

                                                                       
Query: 125 tcaacctgagcactacaaaaggctgatgatatctgcacagttctctcagtgagaaaactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaacctgagcactacaaaaggctgatgatatctgcacagttctctcagtgagaaaactt 384

                                                                       
Query: 185 ttgtagcatagcgctggctactactggaatgttacattttctatgaaattatgaaatttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtagcatagcgctggctactactggaatgttacattttctatgaaattatgaaatttt 444

                                                                       
Query: 245 aaaaatgttgaaagtacaaggacttgcctgaaatttaatcataaattaacccaaaatccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaatgttgaaagtacaaggacttgcctgaaatttaatcataaattaacccaaaatccc 504

                                                                       
Query: 305 tatgaatgatctcaatatcaacaaaccacaattgtcatgtagtttgtcactagccagttt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 tatgaatgatctcaatatcaacaaaccacaattgtcatgtagtttgtcactagctagttt 564

                                                                       
Query: 365 taacataattgacacatcttaacaagaaagcatctagaaatattaatgagttagtaatgc 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caacataattgacacatcttaacaagaaagcatctagaaatattaatgagttagtaatgc 624

                                                                       
Query: 425 gttaaagaatattagctttttaattaaaggtatttaattgtcgcataaaatattgatcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttaaagaatattagctttttaattaaaggtatttaattgtcgcataaaatattgatcat 684

                                                                       
Query: 485 aaataataatgcaattacaatatggctatttctacatatgttcattatataatatctatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaataataatgcaattacaatatggctatttctacatatgttcattatataatatctatg 744

                                                                       
Query: 545 aaaactgaaatgcaatcatcttgaacattttaaatatttctgagaaactcttggttttta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaactgaaatgcaatcatcttgaacattttaaatatttctgagaaactcttggttttta 804

                                                                       
Query: 605 gcatgttgagatactcacgagattcctgagatgtgtaataactttgtagagaaacagcaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcatgttgagatactcacgagattcctgagatgtgtaataactttgtagagaaacagcaa 864

                                          
Query: 665 aggttctcattcctatctttaataaacataa 695
           |||||||||||||||||||||||||||||||
Sbjct: 865 aggttctcattcctatctttaataaacataa 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)