BAC Information

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BAC

Clone NameMSMg01-529D03
Chromosome16 (Build37)
Map Location 88,282,696 - 88,283,212
singlet/doubletsinglet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529D03.T7 (MSMg01no529_d03.b1)MSMg01-529D03.TJ (MSMg01no529_d03.g1)
ACCAG598132AG598133
length685733
length of high quality
(start - end)
44 (59 - 102)623 (86 - 708)
definitionCHROMAT_FILE: MSMg01no529_d03.b1 PHD_FILE: MSMg01no529_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:03 2005CHROMAT_FILE: MSMg01no529_d03.g1 PHD_FILE: MSMg01no529_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATTTGGGCCCNNCAACACTTTTTTTTTTTTTTTTTTTTTATTTTTTTTT
TGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTGGGGGGGGGCGGGGGGGGGGGTGGGGTGTTTTTGTTTTTAGG
GGGGAGGGGGGCGGTATAATTCCNNNNCNCTNNNNNNATATTTTGTNNTT
TNNNTTTTTATAAAAATTTTTTTTTGNNNNNNNTTTTTTTTTTTTTTTTT
TTTTGGNNGGGGGGGCGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNNNNANNNNNTNNNNNNNNNNNAN
NNNNNNNNNNNNAATTATTTATATTTGTGTTTTTT
CTAATTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGGCTATTTACT
CAATGTTTTGATAAATTAAAACCTTATTAAGAAGTAAAATACATTAAAAC
CAGAAGCCTCAAAGCATGTCAGGTCTTCTGGAATTACCTCCTCTCAGTAC
ATAAAGATCTGTAAGTAAATCTATTAAGATAAATAGAAAAAAATCCTTTT
CTATATAGTATGCTAAATAGTGTGTTTTTAAAGGATCTCCTCAAAATAAA
AACAACAGCAGTTACTGTTAGAAAATTATTAACAAAATAAACCTACTACA
GACAAAAATGTCTATATGCCTTCCTGAGAATAGAATCTATTTCTGCAAAT
AGATTATGGAGAATCAGCCATTAATTTCTTGGGTTCCAACATGTGCATGC
TTTTTTCATACTTAATTAAATGTAATTTAACTATGAATATTGATTCGGGC
ATTGGAATATACTCTGTTAAAGATGGTTAAGTGCTGATGTCCTTGAATGG
AAATTTACAACAATCTGTTTGCAAGGAATTCCTTTCTTAGCCAAACAGCC
TAAATATGCCTTTAAAAATCGATACTCAATTCCCAGAGCCGATTAAGTAT
TTCATAATTCAAATTGGAAAAGGATGGTGAAAATCAGGTCTTTTTTTTTT
TTTAATGAAAAGTCAATTGCTACATTGAAGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_d03.g1 MSMg01no529_d03.g1 CHROMAT_FILE:
MSMg01no529_d03.g1 PHD_FILE: MSMg01no529_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:03 2005
         (623 letters)



>mm_chr16_88282191_88283212
          Length = 1022

 Score =  874 bits (452), Expect = 0.0
 Identities = 499/528 (94%), Gaps = 23/528 (4%)
 Strand = Plus / Minus

                                                                        
Query: 108  ctcagtacataaagatctgtaagtaaatctattaagataaatagaaaaaaatccttttct 167
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 ctcagtacataaagttctgtaagtaaatctattaagataaatagaaaaaaatccttttct 963

                                                                        
Query: 168  atatagtatgctaaatagtgtgtttttaaaggatctcctcaaaataaaaacaacagcagt 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  atatagtatgctaaatagtgtgtttttaaaggatctcctcaaaataaaaacaacagcagt 903

                                                                        
Query: 228  tactgttagaaaattattaacaaaat------------aaacctactacagacaaaaatg 275
            ||||||||||||||| ||||||||||            ||||||||||||||||||||||
Sbjct: 902  tactgttagaaaattgttaacaaaataaactttgtataaaacctactacagacaaaaatg 843

                                                                        
Query: 276  tctatatgccttcctgagaatagaatctatttctgcaaatagattatggagaatcagcca 335
            ||||||||||||||||||||          ||||||||||||||||||||||||||||||
Sbjct: 842  tctatatgccttcctgagaa----------ttctgcaaatagattatggagaatcagcca 793

                                                                        
Query: 336  ttaatttcttgggttccaacatgtgcatgcttttttcatacttaattaaatgtaatttaa 395
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  ttaacttcttgggttccaacatgtgcatgcttttttcatacttaattaaatgtaatttaa 733

                                                                        
Query: 396  ctatgaatattgattcgggcattggaatatactctgttaaagatggttaagtgctgatgt 455
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  ctatgaatattgattcaggcattggaatatactctgttaaagatggttaagtgctgatgt 673

                                                                        
Query: 456  ccttgaatggaaatttacaacaatctgtttgcaaggaattcctttcttagccaaacagcc 515
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 672  ccttgaatggaaatttacaacaatctgtttgcaaagaattcctttcttagccaaacagcc 613

                                                                        
Query: 516  taaatatgcctttaaaaatcgatactcaattcccagagccgattaagtatttcataattc 575
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 612  taaatatgcctttaaaaatcgatactcaattcccagagccgataaagtatttcataattc 553

                                                            
Query: 576  aaattggaaaaggatggtgaaaatcaggtctttttttttttttaatga 623
            |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 552  aaattggaaaaggatggtgaaaatcaggtc-ttttttttttttaatga 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1022
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1012
Effective search space:   620356
Effective search space used:   620356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)