BAC Information

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BAC

Clone NameMSMg01-530G14
Chromosome16 (Build37)
Map Location 19,263,641 - 19,264,291
singlet/doubletsinglet
Overlap genenone
Upstream geneDgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2
Downstream geneOlfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530G14.T7 (MSMg01no530_g14.b1)MSMg01-530G14.TJ (MSMg01no530_g14.g1)
ACCAG599056AG599057
length763775
length of high quality
(start - end)		114 (349 - 462)651 (79 - 729)
definitionCHROMAT_FILE: MSMg01no530_g14.b1 PHD_FILE: MSMg01no530_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:43 2005CHROMAT_FILE: MSMg01no530_g14.g1 PHD_FILE: MSMg01no530_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACCATACAATTCTTACATAATTTCAAAGAACTGATATCCGCA
CTTTTCTTATTTCATAAATTACACATCAAAGGACTGATTGCACTTTATTA
TAATGGATCCACCAATGCTTTCATATATACCACGAATAAAGACACCATTT
AAAACCAAAATTACAGATAGATCTTCCTGATGTACAAAGATGCAGAAATC
CTCAATAGACAACTGGTAACACAAATTCAAGATTACATCAATATGATCAT
TCATTATGACCTATGTGGCTCCACTTTTGAAATAAAGAGATCATCATAAT
ATGCATACATATTTTATATGTACCATATGTTGTACATATATGTGTATATA
TATATATATATATGTGTGTGTGTGTGTGTATATATACATATATGTGATCA
CCCGTCATAAGTACACAGTTCAATGAATGAAACACCGCAACCCTGACAAT
AATTGAGCCGCCAGATGGTGCTGTGAACATTCTCATAAGTCTTCATAGAC
CTTACATGTTAAAATTCCTTGCACCATGTACAGCTGCTCACTGGACCTTT
ACAGTGCTACAGCAATTGCATCCTGCCATGGGGAATATGTCCAGCACAGA
GCCCAGGATGTTCCTTATTCTACCTCTGACAGTGTAACTGCTCTGATTGC
TGAACACCATGTGGTGCAACGGATACACAGCTCATGTTTGCCTATGGCGC
ACACATGACATCC

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAAATTGATTCTAACCATA
GGCATTCAACTAAGAGTCCTGGAAAATGCCAGAAAATTGGGGGATTTAGG
CTCCTCTAAGACTTCCATACCAGTGAAAATATGTAATCCTCCTCTAAATT
GAATTGGGTTATTTTGCAGAGGAAACAAGACCTATCACAAGTTGAAGATA
CATGAGAACTTCTAATTATGTCCTCTGAGGTTAGTTGACATTATAAAATG
TCACATAATGTTGAATTTTGGCAATATTTCTGGACACAGAATGTGAAATT
CTGTCACTAGTATCTAATACATGATCCATGATCTTTGATACATTAATCCA
ATCTTAGACTATTTGTTTTCCCACATTCTTTAATTTCTTAAATATGATTC
TCACTAAAGTAACCTGTACATATGATGCTCAAAATCAACGATTTCCTCTT
TCAGTCATGAAAATCATTACTTGTGTTTTGTCAAAGCACTTAAATAAGGA
TAAATCCCCAAAACGTTGAAATCAATGTATAAAAAATTGGGACTAATTTC
TGAAACAAAATATAAACTGAAATAATTGAAGAGGAAAATGTAATACTTAT
TAGGCAGCTTGGCAAATAAATGTAGGGTTGTCTAGTACAATAAGTGGTTA
AATGAACAAATGAGAATAATAAAGCCACTAGAGGGTGGTGTGACCCTTCT
CAGAAGTCTTCAGAGAACACATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_g14.g1 MSMg01no530_g14.g1 CHROMAT_FILE:
MSMg01no530_g14.g1 PHD_FILE: MSMg01no530_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:43 2005
         (651 letters)



>mm_chr16_19263441_19264491
          Length = 1051

 Score = 1197 bits (619), Expect = 0.0
 Identities = 643/651 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaaattgattctaaccataggcattcaactaagagtcctggaaaatgccagaaaatt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 851 atgaaaattgattctaaccataggcattcaactgagagtcctggaaaatgccagaaaatt 792

                                                                       
Query: 61  gggggatttaggctcctctaagacttccataccagtgaaaatatgtaatcctcctctaaa 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 aggggatttaggctcctctaagacttccataccagtgaaaatatgtaatcctcctctaaa 732

                                                                       
Query: 121 ttgaattgggttattttgcagaggaaacaagacctatcacaagttgaagatacatgagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttgaattgggttattttgcagaggaaacaagacctatcacaagttgaagatacatgagaa 672

                                                                       
Query: 181 cttctaattatgtcctctgaggttagttgacattataaaatgtcacataatgttgaattt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cttccaattatgtcctctgaggttagttgacattataaaatgtcacataatgttgaattt 612

                                                                       
Query: 241 tggcaatatttctggacacagaatgtgaaattctgtcactagtatctaatacatgatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tggcaatatttctggacacagaatgtgaaattctgtcactagtatctaatacatgatcca 552

                                                                       
Query: 301 tgatctttgatacattaatccaatcttagactatttgttttcccacattctttaatttct 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 551 tgatctttgatacattaatccaatcttggactatttgttttcccacattctttaatttct 492

                                                                       
Query: 361 taaatatgattctcactaaagtaacctgtacatatgatgctcaaaatcaacgatttcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 taaatatgattctcactaaagtaacctgtacatatgatgctcaaaatcaacgatttcctc 432

                                                                       
Query: 421 tttcagtcatgaaaatcattacttgtgttttgtcaaagcacttaaataaggataaatccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttcagtcatgaaaatcattacttgtgttttgtcaaagcacttaaataaggataaatccc 372

                                                                       
Query: 481 caaaacgttgaaatcaatgtataaaaaattgggactaatttctgaaacaaaatataaact 540
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctaaacgttgaaatcaatgtataaaaaattgggactaatttctgaaacaaaatataaact 312

                                                                       
Query: 541 gaaataattgaagaggaaaatgtaatacttattaggcagcttggcaaataaatgtagggt 600
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 311 gaaataattgaagagaaaaatgtaatacttattaggcagcttggcaaataaatttagggt 252

                                                              
Query: 601 tgtctagtacaataagtggttaaatgaacaaatgagaataataaagccact 651
           || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgcctagtacaataagtggttaaatgaacaaatgagaataataaagccact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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