BAC Information

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BAC

Clone NameMSMg01-530J20
Chromosome16 (Build37)
Map Location 88,845,519 - 89,008,696
singlet/doubletdoublet
Overlap geneKrtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15
Downstream geneLOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530J20.T7 (MSMg01no530_j20.b1)MSMg01-530J20.TJ (MSMg01no530_j20.g1)
ACCAG599210AG599211
length747746
length of high quality
(start - end)		684 (54 - 737)655 (84 - 738)
definitionCHROMAT_FILE: MSMg01no530_j20.b1 PHD_FILE: MSMg01no530_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:00 2005CHROMAT_FILE: MSMg01no530_j20.g1 PHD_FILE: MSMg01no530_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,845,519 - 88,846,199)(89,008,045 - 89,008,696)
sequence
NNNTTTAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGTGTGTTCTGTGAATTATGGCAAATAATTTCACAGA
ACAAGAGAGTGCTTGTGTAAATATGTGACCCCCGTCCTAACAGTCAACCA
TTTCCCTTGCTCTTCTCCCACTAAGGACAGACCACACAGACCTCTGCTAT
AATTGTGCCAGGAATCTCAGACCAGCCTACGTATGCGCCTTGTTTGTGGC
TTAATCTCTGGCAGCTCCCTGGGATCTGGGTGAGATGAGACTGCTATCTT
CCTATGGGGTCACTCTCTCCTCCAGCTTCTTCAATCTTTCCCCTAATTCA
ACCATAGGGGTCCTTGACTTTAGTTCAATGGTTGGGTGTAAGTATCTGCT
GCTGTCTCAGTCAGCTGCTGGTAGGAAGAAGTTGGATGTCTCAGATCCAG
AGCTTAGTAATACATCATCTATGGCTATTTTTAGCTCCTTTGATCCATGG
TCCATTTGTATGTATGGACTCATATCCTTATGGTCATAAGCTAAGTCCTT
TTGCAATATATTAATAGATCTCCTACTTTTTCACCAACTATGATGCTATG
GATAATCTGAGGCCTTTTGCAGAGCTTTGTAACAGAGATTTTAGATGAAC
TCATCTGTATTTTTGAAAAACGACTTCATTTATTACTGTCTTTGTCCTGT
TGCTTATAAAGTTTATTCAACTGATGTCAGTCTGCAGTATGATACTT

NNNNNNCCCCATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACTTTCAATCACATT
GAAATTTATTTTTCAGAACAAGAGGGCAAAGGCTAGTTATCAGTGCCTAG
ATATCAATACCTAGTTAGTAATACCTTTCCAGGAACAACACAGTTCTTAC
TAGTACTAATTGTCATTTAAAGCTCTGAAGTCCCAGCACACAGACAACCT
TTCCTAAGCTTGTTGAGAACAGAGGCAAGATTTCTTCTCTGCAGGTTCAG
CCATTTGCAGAAGGATTCCCTCCCTGAATGACTGAGTTAAGTGAGTTCTT
ACTCTGAAGAGAAGATGCTTGTCAGTTTCTGCTCATTATCTTCTCTCAGA
ATGGAGGATGTGTGCGCCCTTGTTGACATCCGAGGCTCACTTCCTTCATT
GCTATTCTGAGAAGCATTTAAGAAATCCTCCTTAGAAAACAAAAAGAGGA
TCTGCAGGTGTTCACCATCTTCTCTGCAAAGTTTCTGGCTTCCTAAGAAG
GGATTGAAATCTTTATAATCAGGAGCTGAGAGTTTCTGAGATATTCCTCT
TTAAACCAAAGAAACAAGGGCTGGAAAGATGACTCAGCGGTTAAGAGACT
GCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCATCCACGTGGTGGCTCA
CAAACCATCAGTAATGGGATCTGATTCCTTCTTCTTGTGCGTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_j20.b1 MSMg01no530_j20.b1 CHROMAT_FILE:
MSMg01no530_j20.b1 PHD_FILE: MSMg01no530_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:00 2005
         (684 letters)



>mm_chr16_88845316_88846399
          Length = 1084

 Score = 1172 bits (606), Expect = 0.0
 Identities = 663/686 (96%), Gaps = 11/686 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattct-gtgtgttctgtgaattatggcaaataatttcacagaacaagagagtg-cttg 62
           ||||||| ||||| | |||||||||||||||||||||||||||||| |||||| | | ||
Sbjct: 204 gaattcttgtgtgctgtgtgaattatggcaaataatttcacagaaccagagag-gtcgtg 262

                                                                       
Query: 63  tgtaaatatgtgacccccgtcctaacagtcaaccatttcccttgctcttctcccactaag 122
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtaaatatgtgacccccatcctaacagtcaaccatttcccttgctcttctcccactaag 322

                                                                       
Query: 123 gacagaccacacagacctctgctataattgtgccaggaatctcagaccagcctacgtatg 182
           |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 323 gacagatcacacagacctctgctatatttgtgccaggaatctcagaccagcctacgtatg 382

                                                                       
Query: 183 cgccttgtttgtggcttaatctctggcagctccctgggatctgggtgagatgagactgct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cgccttgtttgtggcttaatctctggcagctccctgggatctgggtgagatgagactgct 442

                                                                       
Query: 243 atcttcctatggggtcactctctcctccagcttcttcaatctttcccctaattcaaccat 302
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 443 gtcttcctatggggtcactctctcctccagcttcttcaatctttcccttaattcaaccat 502

                                                                       
Query: 303 aggggtcc----ttgactttagttcaatggttgggtgtaagtatctgctgctgtctcagt 358
           ||||||||    ||    ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 aggggtccccaatt----ttagttcaatggttgggtgtaagtatctgcttctgtctcagt 558

                                                                       
Query: 359 cagctgctggtaggaagaagttggatgtctcagatccagagcttagtaatacatcatcta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cagctgctggtaggaagaagttggatgtctcagatccagagcttagtaatacatcatcta 618

                                                                       
Query: 419 tggctatttttagctcctttgatccatggtccatttgtatgtatggactcatatccttat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tggctatttttagctcctttgatccatggtccatttgtatgtatggactcatatccttat 678

                                                                       
Query: 479 ggtcataagctaagtccttttgcaatatattaatagatctcctactttttcaccaactat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggtcataagctaagtccttttgcaatatattaatagatctcctactttttcaccaactat 738

                                                                       
Query: 539 gatgctatggataatctgaggccttttgcagagctttgtaacagagattttagatgaact 598
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gatgctagggataatctgaggccttttgcagagctttgtaacagagattttagatgaact 798

                                                                       
Query: 599 catctgtatttttgaaaaacgacttcatttattactgtctttgtcctgttgcttataaag 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 catctgtatttttgaaaaacgacttcatttattactgtctttgtcctgttgcttataaag 858

                                     
Query: 659 tttattcaactgatgtcagtctgcag 684
           ||||||||||||||||||| ||||||
Sbjct: 859 tttattcaactgatgtcagcctgcag 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_j20.g1 MSMg01no530_j20.g1 CHROMAT_FILE:
MSMg01no530_j20.g1 PHD_FILE: MSMg01no530_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:00 2005
         (655 letters)



>mm_chr16_89007963_89009017
          Length = 1055

 Score = 1141 bits (590), Expect = 0.0
 Identities = 637/654 (97%), Gaps = 4/654 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactttcaatcacattgaaatttatttttcagaacaagagggcaaaggctagttatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atactttcaatcacattgaaatttatttttcagaacaagagggcaaaggctagttatcag 675

                                                                       
Query: 61  tgcctagatatcaatacctagttagtaataccttt--ccaggaacaacacagttcttact 118
           ||||||| ||||| |||||||||||||||||||||  ||  |||||||||||||||||||
Sbjct: 674 tgcctagttatcagtacctagttagtaataccttttccc--gaacaacacagttcttact 617

                                                                       
Query: 119 agtactaattgtcatttaaagctctgaagtcccagcacacagacaacctttcctaagctt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agtactaattgtcatttaaagctctgaagtcccagcacacagacaacctttcctaagctt 557

                                                                       
Query: 179 gttgagaacagaggcaagatttcttctctgcaggttcagccatttgcagaaggattccct 238
           ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct: 556 gttgagaacagaggcaagatttcttctctgcagtttcagccatttgcagaaagatcccct 497

                                                                       
Query: 239 ccctgaatgactgagttaagtgagttcttactctgaagagaagatgcttgtcagtttctg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ccctgaatgactgagttaagtgagttcttactctgaagagaagatgcttgtcagtttctg 437

                                                                       
Query: 299 ctcattatcttctctcagaatggaggatgtgtgcgcccttgttgacatccgaggctcact 358
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctcattatcttctctcagaacagaggatgtgtgcgcccttgttgacatccgaggctcact 377

                                                                       
Query: 359 tccttcattgctattctgagaagcatttaagaaatcctccttagaaaacaaaaagaggat 418
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 376 tccttcattgctattctgagaagcatttaagaaatcctccatagaaaacaaaaagaggat 317

                                                                       
Query: 419 ctgcaggtgttcaccatcttctctgcaaagtttctggcttcctaagaagggattgaaatc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctgcaggtgttcaccatcttctctgcaaagtttctggcttcctaagaagggattgaaatc 257

                                                                       
Query: 479 tttataatcaggagctgagagtttctgagatattcctctttaaaccaaagaaacaagggc 538
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 256 tttataatcaggagctgagagtttctgagatattcctctttaaaacaaagaaacaagggc 197

                                                                       
Query: 539 tggaaagatgactcagcggttaagagactgctcttccagaggtcctgagttcaaatccca 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tggaaagatgactcagcggttaagagactgctcttccagaggtcctgagttcaaatccca 137

                                                                 
Query: 599 gcatccacgtggtggctcacaaaccatcagtaatgggatctgattccttcttct 652
           |||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct: 136 gcatccacatggtgactcacaaaccatctgtaataggatctgattccttcttct 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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