BAC Information

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BAC

Clone NameMSMg01-530N21
Chromosome16 (Build37)
Map Location 41,448,018 - 41,448,336
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667450
Downstream geneLsamp, Gap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530N21.T7 (MSMg01no530_n21.b1)MSMg01-530N21.TJ (MSMg01no530_n21.g1)
ACCAG599404AG599405
length782764
length of high quality
(start - end)
327 (64 - 390)605 (85 - 689)
definitionCHROMAT_FILE: MSMg01no530_n21.b1 PHD_FILE: MSMg01no530_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:19 2005CHROMAT_FILE: MSMg01no530_n21.g1 PHD_FILE: MSMg01no530_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGAAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXGGTGGTACCTGGGAGTGGGTAGGTGGGTGGGGGAATA
CCCTCATAGAAGCAGGGGGAGGGAAGATGGGGTGGGGGTTTTCAGTGGGG
AAACCAGGAAGGGGATAGCATTTGAAATATAAAGAAAATATCTAATAAAA
AAAAAGAAAAAGAAAACTACTTCTGGATTATTCTCAGGTTAGTTGAATAC
AAGTAGTCAAATCTATAACACATATACTTTAATGCCTATGTATTAATCAG
GCTTCTCTAGAGAAACAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGA
GATATATAGATAATAGCTCTTCTATGCCCCTATTTTCCTTATTTTTTATA
CCCATACGCTGTATAAGACCTACATTCCCTTTTACATTATACTGGATTCT
GAAAATGGTGGTATATCAACACAATGGAAGACAACTTCTCCTCTTACTTT
TAATGAATTTTTTATCTTTCTTAACTATATGTATTGCACCTGTGAGTTAT
CTTTTCTTAGTGTGATATCCCATTCTCTCTCCAATCTCTTTTCTCACTGT
ATTCCCTTGATAACCTGGTTACCCCGCCCCCCCTCTTATTCATACTCCTA
TATTTCCCGATATTATTTTTGCTTCTTCTCCTTTATTATTTAACTTACCT
CTTTTTACACTTCTCCTTGAGCCGCTTTCTAT
NNNNNNNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACC
GAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGG
GAAATGCAAATCTAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAG
AAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCA
CTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACC
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAA
CAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATA
ATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGAT
ACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAA
AGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATC
ATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTC
ACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGAT
ATAATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGG
ACACTATGCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_n21.b1 MSMg01no530_n21.b1 CHROMAT_FILE:
MSMg01no530_n21.b1 PHD_FILE: MSMg01no530_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:19 2005
         (327 letters)



>mm_chr16_41447744_41448470
          Length = 727

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%), Gaps = 1/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  tgggagtgggtaggtgggtgggggaataccctcatagaagcagggggagggaagatgggg 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgggagtgggtaggtgggtgggggaataccctcatagaagcagggggagggaagatgggg 534

                                                                       
Query: 70  tgggggttttcagtggggaaaccaggaaggggatagcatttgaaatataaagaaaatatc 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgggggttttcagtggggaaaccaggaaggggatagcatttgaaatataaagaaaatatc 474

                                                                       
Query: 130 taat-aaaaaaaaagaaaaagaaaactacttctggattattctcaggttagttgaataca 188
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 taataaaaaaaaaagaaaaagaaaactacttctggattattctcaggttagttgaataca 414

                                                                       
Query: 189 agtagtcaaatctataacacatatactttaatgcctatgtattaatcaggcttctctaga 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agtagtcaaatctataacacatatactttaatgcctatgtattaatcaggcttctctaga 354

                                                                       
Query: 249 gaaacaacagagagagagagagagagagagagagagagagagagagagagagagagagag 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaaacaacagagagagagagagagagagagagagagagagagagagagagagagagagag 294

                              
Query: 309 agagagagagagagagaga 327
           |||||||||||||||||||
Sbjct: 293 agagagagagagagagaga 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 140
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)