BAC Information

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BAC

Clone NameMSMg01-531C05
Chromosome16 (Build37)
Map Location 74,887,806 - 74,949,841
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531C05.T7 (MSMg01no531_c05.b1)MSMg01-531C05.TJ (MSMg01no531_c05.g1)
ACCAG599611AG599612
length743746
length of high quality
(start - end)		655 (53 - 707)647 (83 - 729)
definitionCHROMAT_FILE: MSMg01no531_c05.b1 PHD_FILE: MSMg01no531_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:41 2005CHROMAT_FILE: MSMg01no531_c05.g1 PHD_FILE: MSMg01no531_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,949,338 - 74,949,841)(74,887,806 - 74,888,450)
sequence
NNNAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTACTGAATTCAAGTGAACCCCCATCTCCATCCTGTCTC
TTCTAGGAGAGTTTGTGTATAGCATTTTGATTCATTCTATCAAATCTTTC
TCTGATTAGTCACTTTGTGTGCTCATCAATGAGATCTCACTTTTAAACAT
CGCTCTTTCCTACGACAAATTAACCTTAGCTTCATCTTTTGGGATTAAAG
ATGTGTATTAAGGGTGTGTCTGTATTCCAGCTTGAGGGATTTGAATTCCT
CTACATGTTCTATTGGTAAGGTGACCTTCCAAGTAAACCTCCGCTATGCA
ATTATGCATCTTTGAATTAACCAAAGGAGGGAATTATTATAATTATTATT
TTACAACATAAACTTTTATCTTACAACACCTACAACACCTGGTTTGGTAG
TCAGTATTCAAAGAGGTACTCAGTAGAAAATAACTCTTCAATTAAAGCTT
GATTGCTGGAAATAATTAATACATTAATATATCAATATGTGACTTGATGA
TACTCTGTAGCAAGTAAGGAACAGAGACCATTTGTAAATTTGTAGAGCCT
GTTGGTGCTTGTTTATATGCTTATAACACCTGCAACCTAAAAATGTTTCC
TTACATTTTATGCATAGATGCAATGGTTCTTTGAAAATGTTAAAGATGAA
AAGGAAGACAAGACTTTCACTGAATGTGATTACCTTTTATCTN

NNNTTTCGAATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCATTAAGATGTGAATC
TGAGAAACTGGTTTTAGAAGACTAGAGAAAACTCTCTAAGGAAAGGAGTA
AAGGAAACACTAGGAAAGCAGAAAAGTATGGAAAGCAAATAAACACGTTA
GTTTAAGTCAGTCCAGAAGAGGCAGTGCATTGATGAATGAAAGGTTTTTC
CCTTACTAAGACACTGTCTTCTTCTAACAAGAGATAGGATTGCTCAGTAC
CTTTCCAGATAAGCGCTGATGAGCAAATGTTTCTTTGAATTTTACTTTCT
ACACATAACTGTAGCCTCCCCCATCCTTGAAGCAGGCTGATTCAGACCTT
GCTGCCACTGAATATGAGATCACCTGGGGTGTAGCCTTCTGACTTAGATG
GCTACATTGTTATGTCAACTACCACTGCTTTTCTCTGACTCTGCTACCTG
CTGAGAGACCCTTGAGAGACCCTTGAGACATCCTGGAGATACTCCTATCC
TGCCTGTCTGTCCTTGCCTACAGGCTGGCTCCAGGCACCAAAAATAGACT
GGCAGGGGGGATGGGCCTTCCCCCTTATAAGCACTGTCTTTTAGTAAACT
CGCAGGCCTTGATCAGAGAAAAGTATGTCTTGGCTTCATCATTCTTTTCT
CGCAGTCTTGTCTCTTTCAGCCCCAGCCTGTCTTCCAGATATATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_c05.b1 MSMg01no531_c05.b1 CHROMAT_FILE:
MSMg01no531_c05.b1 PHD_FILE: MSMg01no531_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:41 2005
         (655 letters)



>mm_chr16_74948787_74949841
          Length = 1055

 Score =  951 bits (492), Expect = 0.0
 Identities = 501/504 (99%)
 Strand = Plus / Minus

                                                                        
Query: 152  tctttcctacgacaaattaaccttagcttcatcttttgggattaaagatgtgtattaagg 211
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1055 tctttcctacgacaaattaaccttagcttcatcttttgggattaaagatgtgtactaagg 996

                                                                        
Query: 212  gtgtgtctgtattccagcttgagggatttgaattcctctacatgttctattggtaaggtg 271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  gtgtgtctgtattccagcttgagggatttgaattcctctacatgttctattggtaaggtg 936

                                                                        
Query: 272  accttccaagtaaacctccgctatgcaattatgcatctttgaattaaccaaaggagggaa 331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935  accttccaagtaaacctccgctatgcaattatgcatctttgaattaaccaaaggagggaa 876

                                                                        
Query: 332  ttattataattattattttacaacataaacttttatcttacaacacctacaacacctggt 391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875  ttattataattattattttacaacataaacttttatcttacaacacctacaacacctggt 816

                                                                        
Query: 392  ttggtagtcagtattcaaagaggtactcagtagaaaataactcttcaattaaagcttgat 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815  ttggtagtcagtattcaaagaggtactcagtagaaaataactcttcaattaaagcttgat 756

                                                                        
Query: 452  tgctggaaataattaatacattaatatatcaatatgtgacttgatgatactctgtagcaa 511
            |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755  tgctggtaataatgaatacattaatatatcaatatgtgacttgatgatactctgtagcaa 696

                                                                        
Query: 512  gtaaggaacagagaccatttgtaaatttgtagagcctgttggtgcttgtttatatgctta 571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695  gtaaggaacagagaccatttgtaaatttgtagagcctgttggtgcttgtttatatgctta 636

                                                                        
Query: 572  taacacctgcaacctaaaaatgtttccttacattttatgcatagatgcaatggttctttg 631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635  taacacctgcaacctaaaaatgtttccttacattttatgcatagatgcaatggttctttg 576

                                    
Query: 632  aaaatgttaaagatgaaaaggaag 655
            ||||||||||||||||||||||||
Sbjct: 575  aaaatgttaaagatgaaaaggaag 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no531_c05.g1 MSMg01no531_c05.g1 CHROMAT_FILE:
MSMg01no531_c05.g1 PHD_FILE: MSMg01no531_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:41 2005
         (647 letters)



>mm_chr16_74887604_74888650
          Length = 1047

 Score = 1108 bits (573), Expect = 0.0
 Identities = 627/645 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   cattaagatgtgaatctgagaaactggttttagaagactagagaaaactctctaaggaaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cattaagatgtgaatctgagaaactggttttagaagactagagaaaactctctaaggaaa 262

                                                                       
Query: 63  ggagtaaaggaaacactaggaaagcagaaaagtatggaaagcaaataaacacgttagttt 122
           |||||||||||||||||||||||| |||||| |||||||||||||||| ||| |||||||
Sbjct: 263 ggagtaaaggaaacactaggaaagtagaaaactatggaaagcaaataagcaccttagttt 322

                                                                       
Query: 123 aagtcagtccagaagaggcagtgcattgatgaatgaaaggtttttcccttactaagacac 182
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaatcagtccagaagaggcagtgcattgatgaatgaaaggtttttcccttactaagacac 382

                                                                       
Query: 183 tgtcttcttctaacaagagataggattgctcagtacctttccagataagcgctgatgagc 242
           |||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 383 tgtcttcttccaacaggagataggattgcccagtatctttccagataagcgctgatgagc 442

                                                                       
Query: 243 aaatgtttctttgaattttactttctacacataactgtagcctcccccatccttgaagca 302
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaatgtttctttgaactttactttctacacataactgtagcctcccccatccttgaagca 502

                                                                       
Query: 303 ggctgattcagaccttgctgccactgaatatgagatcacctggggtgtagccttctgact 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggctgattcagaccttgctgccactgaatatgagatcacctggggtgtagccttctgact 562

                                                                       
Query: 363 tagatggctacattgttatgtcaactaccactgcttttctctgactctgctacctgctga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagatggctacattgttatgtcaactaccactgcttttctctgactctgctacctgctga 622

                                                                       
Query: 423 gagacccttgagagacccttgagacatcctggagatactcctatcctgcctgtctgtcct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 623 gagacccttgagagacccttgagacatcctggagatactcctatcctgcatgtctgtcct 682

                                                                       
Query: 483 tgcctacaggctggctccaggcaccaaaaatagactggcaggggggatgggccttccccc 542
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 683 tgcctacaggctggctctaggcaccaagaatagactggcaggggggatgggccttcctcc 742

                                                                       
Query: 543 ttataagcactgtcttttagtaaactcgcaggccttgatcagagaaaagtatgtcttggc 602
           |||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct: 743 ttataagcactgtcatttagtaaactcacaggctttgatcagagaaaagtttgtcttggc 802

                                                        
Query: 603 ttcatcattcttttctcgcagtcttgtctctttcagccccagcct 647
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttcatcattcttttctcgcagtcttgtctctttcagccccagcct 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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