BAC Information

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BAC

Clone NameMSMg01-531E18
Chromosome16 (Build37)
Map Location 90,622,095 - 90,757,661
singlet/doubletdoublet
Overlap gene2610039C10Rik, Mrap, 4921511H13Rik
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
Downstream gene4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531E18.T7 (MSMg01no531_e18.b1)MSMg01-531E18.TJ (MSMg01no531_e18.g1)
ACCAG599733AG599734
length762779
length of high quality
(start - end)
703 (47 - 749)581 (76 - 656)
definitionCHROMAT_FILE: MSMg01no531_e18.b1 PHD_FILE: MSMg01no531_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:53 2005CHROMAT_FILE: MSMg01no531_e18.g1 PHD_FILE: MSMg01no531_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,757,145 - 90,757,661)(90,622,095 - 90,622,677)
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAAGCACTGCGAGGGGTCGGGCAGGATGGGCCCATGCTGCAGT
GGACGATTGGAGCAGAAGATTCCTTGTCATTCCTGACGCAGCAGCACTAC
CACGAGGCTCTGCCTGTGACAGGGCAAGTGTATGCCCAAGAGTCACTGGG
TCTTTTAGTTCATTTTTCAAAAGTCATTTTCAACTCTTGAGAAGCTAACC
CAAATACACAGGCGCAATCCCTAACCCCAGGAACTCTGCATATTTAACAG
TCATGTTTTGCTATAATGCTAGATGACTTCTTAAGGGTGCCCGGACCCAT
CACAAGAGGTCTGCGGAGCCAGGCGTGGTGGCGAACGCCTTTAATCCCAG
CACTCGGGAGGCAGAGGTAGGCAGATTTCTGAGTTCGAGGCCAGGCTGGT
CTACAAAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCT
CAAAAAACCAAAAAAACCCAAAAACCAAAAAAACAAAGAGGTCTGTAGCA
TTGCCATTTCATAAACCTGTTGTTGCAGAATGTGGTTGTTCATTATCTTT
AACCAAAAGGATTAAATGTTCCTTTCTCCTAATACAAAAACTAGCAGTTC
ATACCTGGAAATAAACACCACTGGAGATTGGCATTTAAAAGGGTATTTTT
CTAAAATTTCTTTTGTAGACTTAGTGGTTGGTTCTTATAATCACTCANGA
GGCTGTGGCAGA
CCATTGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGCAAGTTGGGGCTTTGTCCAGG
ACCTCCTTCTCTCCAGAGGTTGCCTGCATGCTGCAGCCTGCAGCCTGCAG
AAAAGCTATCTAGAAGCTCCCCACTGAGGGGACGTCATCCAACGGTCATT
TGGCTCTGTTTTCCCTAAGTCCTCACAGTGGGGACTGACAGTGTTCACTG
TTCATATTTTACTGAGGAAAAAAAAAGTGCCCATCACCTCACTCCCAGAA
AATCAAATGCTGCTTTCCCTGCTGGCGGAACAGCACGCTCTGACAATCCC
CACTGAGCAGAGCCAGAGTGATTCATGCTCAGTATTTAGACGAAAGACCA
ACATATGCTGGGCACATGTGCGGGGAGTCGGCCATGTTGCCAAGCTGCGT
CCTGAGAACGGCCCACTCAAAAGAAAGTTCCTTATTTCACCCTCTGCCCA
AAACAGAAACTCATATCAGTTCTGCCACCTAAATAGAGCAGCCGTAGGCC
TTGGCATTTTGGAAAGGCTGCTTGGAGGCACGGGACGCTCCTTTGAAATC
AGACCACAGAAGGGCAAGTAGGATTTATAGAAACTGAATGAGCCCCATTA
CCTAAGAATAAAAGAACCCAGATTCTAAAAACACAGCAGCACTCTTTTCT
AGCCGGGCCCCCGTGGTTTTGTGCCATGTGATGCTGAGAAACTGTGCCCT
AAAAGATGTTTCTGTGGNTCTTTGCACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_e18.b1 MSMg01no531_e18.b1 CHROMAT_FILE:
MSMg01no531_e18.b1 PHD_FILE: MSMg01no531_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:53 2005
         (703 letters)



>mm_chr16_90757145_90758247
          Length = 1103

 Score =  901 bits (466), Expect = 0.0
 Identities = 505/518 (97%), Gaps = 2/518 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaagcactgcgaggggtcgggcaggatgggcccatgctgcagtggacgattgg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattctcaagcactgggaggggtcgggcaggatgggcccatgctgcagtggacgattgg 458

                                                                       
Query: 65  agcagaagattccttgtcattcctgacgcagcagcactaccacgaggctctgcctgtgac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agcagaagattccttgtcattcctgacgcagcagcactaccacgaggctctgcctgtgac 398

                                                                       
Query: 125 agggcaagtgtatgcccaagagtcactgggtcttttagttcatttttcaaaagtcatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agggcaagtgtatgcccaagagtcactgggtcttttagttcatttttcaaaagtcatttt 338

                                                                       
Query: 185 caactcttgagaagctaacccaaatacacaggcgcaatccctaaccccaggaactctgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caactcttgagaagctaacccaaatacacaggcgcaatccctaaccccaggaactctgca 278

                                                                       
Query: 245 tatttaacagtcatgttttgctataatgctagatgacttcttaagggtgcccggacccat 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 277 tatttaacagtcatgttttgctacaatgctagatgacttcttaagggtgcctggacccat 218

                                                                       
Query: 305 cacaagaggtctgcggagccaggcgtggtggcga-acgcctttaatcccagcactcggga 363
           ||||||||||||| |||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct: 217 cacaagaggtctgtggagccaggcgtggtggc-acacacctttaatcccagcactgggga 159

                                                                       
Query: 364 ggcagaggtaggcagatttctgagttcgaggccaggctggtctacaaagtgagttccagg 423
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ggcagaggcaggcagatttctgagttcgaggccaggctggtctacaaagtgagttccagg 99

                                                                       
Query: 424 acagccagagctatacagagaaaccctgtctcaaaaaaccaaaaaaacccaaaaaccaaa 483
           |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||
Sbjct: 98  acagccagagctatacagagaaaccctgtctcgaaaaaccaaaaaaaatcaaaaaccaaa 39

                                                 
Query: 484 aaaacaaagaggtctgtagcattgccatttcataaacc 521
           ||||| ||||||||||||||||||||||||||||||||
Sbjct: 38  aaaaccaagaggtctgtagcattgccatttcataaacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no531_e18.g1 MSMg01no531_e18.g1 CHROMAT_FILE:
MSMg01no531_e18.g1 PHD_FILE: MSMg01no531_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:53 2005
         (581 letters)



>mm_chr16_90621895_90622877
          Length = 983

 Score = 1116 bits (577), Expect = 0.0
 Identities = 581/583 (99%), Gaps = 2/583 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcaagttggggctttgtccaggacctccttctctccagaggttgcctgcatgctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggcaagttggggctttgtccaggacctccttctctccagaggttgcctgcatgctgca 260

                                                                       
Query: 61  gcctgcagcctgcagaaaagctatctagaagctccccactgaggggacgtcatccaacgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgcagcctgcagaaaagctatctagaagctccccactgaggggacgtcatccaacgg 320

                                                                       
Query: 121 tcatttggctctgttttccctaagtcctcacagtggggactgacagtgttcactgttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatttggctctgttttccctaagtcctcacagtggggactgacagtgttcactgttcat 380

                                                                       
Query: 181 attttactgaggaaaaaaaaa--gtgcccatcacctcactcccagaaaatcaaatgctgc 238
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttactgaggaaaaaaaaaaagtgcccatcacctcactcccagaaaatcaaatgctgc 440

                                                                       
Query: 239 tttccctgctggcggaacagcacgctctgacaatccccactgagcagagccagagtgatt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccctgctggcggaacagcacgctctgacaatccccactgagcagagccagagtgatt 500

                                                                       
Query: 299 catgctcagtatttagacgaaagaccaacatatgctgggcacatgtgcggggagtcggcc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgctcagtatttagacgaaagaccaacatatgctgggcacatgtgcggggagtcggcc 560

                                                                       
Query: 359 atgttgccaagctgcgtcctgagaacggcccactcaaaagaaagttccttatttcaccct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgttgccaagctgcgtcctgagaacggcccactcaaaagaaagttccttatttcaccct 620

                                                                       
Query: 419 ctgcccaaaacagaaactcatatcagttctgccacctaaatagagcagccgtaggccttg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcccaaaacagaaactcatatcagttctgccacctaaatagagcagccgtaggccttg 680

                                                                       
Query: 479 gcattttggaaaggctgcttggaggcacgggacgctcctttgaaatcagaccacagaagg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcattttggaaaggctgcttggaggcacgggacgctcctttgaaatcagaccacagaagg 740

                                                      
Query: 539 gcaagtaggatttatagaaactgaatgagccccattacctaag 581
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcaagtaggatttatagaaactgaatgagccccattacctaag 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 983
Length adjustment: 10
Effective length of query: 571
Effective length of database: 973
Effective search space:   555583
Effective search space used:   555583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)