BAC Information

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BAC

Clone NameMSMg01-531I04
Chromosome16 (Build37)
Map Location 41,124,468 - 41,125,121
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531I04.T7 (MSMg01no531_i04.b1)MSMg01-531I04.TJ (MSMg01no531_i04.g1)
ACCAG599893AG599894
length736751
length of high quality
(start - end)
542 (54 - 595)654 (83 - 736)
definitionCHROMAT_FILE: MSMg01no531_i04.b1 PHD_FILE: MSMg01no531_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:09 2005CHROMAT_FILE: MSMg01no531_i04.g1 PHD_FILE: MSMg01no531_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGTACGCAATACTGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCATACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGC
GGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGCAATACCG
CTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATG
CTCCACTATCTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAAATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACAC
ATTCACAAAGGAATTCTCACAATATGTACTCACTGATAAGTGGATATTAG
CCCCAAACCTAGGATTCCCAAGATATAAGATACAACTTGCTAAACACATG
ATACTCAAGAAGAATGAAGACTGAAGTTGTGGACTC
CCTTTTTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTTCCCTGCCTAGCT
GTTCTTCCTTGATCTGGGGTCCTTTTTAAGAAAACAACAGGGAAAAAATA
GGAAGAAACCTACAGTGGGGCAGCCTGAAGCTGCAACACAAATAATGATT
ATTCCTGTCAAGGTTTAACTGTGGTTGCTAAGTTACTGGTCTTCTCTGCA
AAACCTTGAAGTATGGGACACATTAGGAGCTCGTTAGGTCCCAGTGACTT
GCGGTAAATGTACAATTTGTCTCTGTGCTAAACACACTTCAAAAATAACA
ATAATAAAAAAGAATCCCACATGGCTTAAAAATCTGTGACCTTTCTGTTG
TTACCCTTCTCCTCCCCTTTACACCTCTTCTCCTACTTGCATGTTATTAT
GGAAACTGCTATTGGAAAAGTTAAAGAATTGTGCCAAGGAACTTGATATA
TTAGACTACAGCATTTGGCATTTAATGAAGGTTTTCACAAAGAGCACCAC
AGGAAGGGTCAAGGAAATCTAAAGGGAGTTTCTATAATAATTGTTTACAG
TGCACACAGCAGGGCTATCAGCTCAATCTCTGAGAGCACCTGTAGTGTGT
GTGCCTGGCTGCAAAACATTGCAGAAGCAGGACGCATTTGACTCTTTCAT
CCATTTTCTATTTGCACTAATAATATCACTGTCAAATTCACAGATCCTGG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_i04.g1 MSMg01no531_i04.g1 CHROMAT_FILE:
MSMg01no531_i04.g1 PHD_FILE: MSMg01no531_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:09 2005
         (654 letters)



>mm_chr16_41124268_41125321
          Length = 1054

 Score = 1241 bits (642), Expect = 0.0
 Identities = 651/654 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttccctgcctagctgttcttccttgatctggggtcctttttaagaaaacaacaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tcctttccctgcctagctgttcttccttgatctggggtcctttttaagaaaacaacagga 260

                                                                       
Query: 61  aaaaaataggaagaaacctacagtggggcagcctgaagctgcaacacaaataatgattat 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaataggaaaaaacctacagtggggcagcctgaagctgcaacacaaataatgattat 320

                                                                       
Query: 121 tcctgtcaaggtttaactgtggttgctaagttactggtcttctctgcaaaaccttgaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgtcaaggtttaactgtggttgctaagttactggtcttctctgcaaaaccttgaagt 380

                                                                       
Query: 181 atgggacacattaggagctcgttaggtcccagtgacttgcggtaaatgtacaatttgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgggacacattaggagctcgttaggtcccagtgacttgcggtaaatgtacaatttgtct 440

                                                                       
Query: 241 ctgtgctaaacacacttcaaaaataacaataataaaaaagaatcccacatggcttaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgctaaacacacttcaaaaataacaataataaaaaagaatcccacatggcttaaaaa 500

                                                                       
Query: 301 tctgtgacctttctgttgttacccttctcctcccctttacacctcttctcctacttgcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtgacctttctgttgttacccttctcctcccctttacacctcttctcctacttgcat 560

                                                                       
Query: 361 gttattatggaaactgctattggaaaagttaaagaattgtgccaaggaacttgatatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttattatggaaactgctattggaaaagttaaagaattgtgccaaggaacttgatatatt 620

                                                                       
Query: 421 agactacagcatttggcatttaatgaaggttttcacaaagagcaccacaggaagggtcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agactacagcatttggcatttaatgaaggttttcacaaagagcaccacaggaagggtcaa 680

                                                                       
Query: 481 ggaaatctaaagggagtttctataataattgtttacagtgcacacagcagggctatcagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 ggaaatctaaagggagtttctataataattgtttacagtgcacacagcagggccatcagc 740

                                                                       
Query: 541 tcaatctctgagagcacctgtagtgtgtgtgcctggctgcaaaacattgcagaagcagga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaatctctgagagcacctgtagtgtgtgtgcctggctgcaaaacattgcagaagcagga 800

                                                                 
Query: 601 cgcatttgactctttcatccattttctatttgcactaataatatcactgtcaaa 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cgcatttgactctttcatccattttctatttgcactaataatatcactgtcaaa 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)