BAC Information

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BAC

Clone NameMSMg01-533D12
Chromosome16 (Build37)
Map Location 15,220,844 - 15,221,398
singlet/doubletsinglet
Overlap geneLOC385748
Upstream geneMyh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737, LOC665653
Downstream geneLOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533D12.T7 (MSMg01no533_d12.b1)MSMg01-533D12.TJ (MSMg01no533_d12.g1)
ACCAG601193AG601194
length729742
length of high quality
(start - end)
588 (52 - 639)555 (76 - 630)
definitionCHROMAT_FILE: MSMg01no533_d12.b1 PHD_FILE: MSMg01no533_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:22 2005CHROMAT_FILE: MSMg01no533_d12.g1 PHD_FILE: MSMg01no533_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCCCTTTCTCTAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCCTCTGAAGAACAGACTGGGAGGAAGAAGCAGCTCGTT
ATGAGAGAGAAAAGTGCCAGCCAGATAAAATGCGAGCTAGTTGGTCAAGA
AAAAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGCTTGGCCTCCGGG
CAGTCGGCTTCAAGGTGCACTTCCGCCCTATGCGGAGCCCCCGCCCTGCG
TAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAGAGACAATGCGCA
GAGAGGCAATGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAAT
ACAACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACG
CTCCGGTAGAATATGTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAA
TATGGAGCCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGG
CATGGCACTAACTCCTGCCGACTGGCAAACGATTGTAAAAGCCGCTCTCC
CTAGTATGGGCAAATATATGGAATGGAGAGCTCTTTGGCAAGAGGCTGCA
CAAGCGCAGGCCCGAGCAAACGCAGCTGCTTTGACTCCAGAGCAGAGAGA
TTGGACTTTTGACTTGTTAACGGGTCAGGGAGCTTATTCTGCTGATCAAA
CAAACTTACATTGGGGAGCTTATGCCCAN
NCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAAGGTCTTGCTCAAGGACAT
TCTAGGGCTGTTGGAACACTGGCAGAAGGCTTTAGAGAGCACGTGGATCC
ATACACTAGACTAACGCGGGAATGGAGAATTAATGTATGGGTTAGAGAGA
ACGTCAGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTTGCCTCATGA
GCAGCTTTTAGGCATCCCTACCTGACAAGCTGACTCGACCAGAGTGCCAT
GGTAAGGCAGGAGACCTCAAGGCTTTCAAGGAATGCCAAGTGCTCTGCTG
CAGTCTGGGCCTTGTTCAGCTCTTCTATATCTAGCTCCAACTGGTAATAC
TGTGGCCTCTCCTGACCTTCCTACTACTGCTCAGTCCCTACAGCTGTGCC
AAAACTTGCACCTCTTGCTACAGTTGCTGCCACTGCTCCCAGGGCTGTGG
CTCCATACAAGTATGCCTCCAGTGTCTGAAGCCCTCACCCTACCATTCAT
CTGCTGCAGGACACCTAGTCTGCAGTCCATGCCCAGGGTCAGAAGCACAT
GATTGCCTCCATGCTGGCTGCAGCGCCCCTCCCCTCCCCCATCCCCCAGG
AGCAGAAGCAGATGCTGGGGGAGCATCTGTTTCCACTTATCCAAACAATG
AATTCAAACCTTGGCTGGAAAAATTACTGAGATGCTGCTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_d12.g1 MSMg01no533_d12.g1 CHROMAT_FILE:
MSMg01no533_d12.g1 PHD_FILE: MSMg01no533_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:22 2005
         (555 letters)



>mm_chr16_15220644_15221598
          Length = 955

 Score = 1042 bits (539), Expect = 0.0
 Identities = 551/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcccaaggtcttgctcaaggacattctagggctgttggaacactggcagaaggctttag 60
           |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcccagggtcttgctcaaggacgttctagggctgttggaacactggcagaaggctttag 260

                                                                       
Query: 61  agagcacgtggatccatacactagactaacgcgggaatggagaattaatgtatgggttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagcacgtggatccatacactagactaacgcgggaatggagaattaatgtatgggttag 320

                                                                       
Query: 121 agagaacgtcagactccaggaggagagcttccttgaaactctttttgcctcatgagcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagaacgtcagactccaggaggagagcttccttgaaactctttttgcctcatgagcagc 380

                                                                       
Query: 181 ttttaggcatccctacctgacaagctgactcgaccagagtgccatggtaaggcaggagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaggcatccctacctgacaagctgactcgaccagagtgccatggtaaggcaggagac 440

                                                                       
Query: 241 ctcaaggctttcaaggaatgccaagtgctctgctgcagtctgggccttgttcagctcttc 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ctcaaggctttcaaggaatgccaagtgctctgctgcagtctgggccttcttcagctcttc 500

                                                                       
Query: 301 tatatctagctccaactggtaatactgtggcctctcctgaccttcctactactgctcagt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tatatctagctccaactggtaatactgtggcctctcctgacctttctactactgctcagt 560

                                                                       
Query: 361 ccctacagctgtgccaaaacttgcacctcttgctacagttgctgccactgctcccagggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctacagctgtgccaaaacttgcacctcttgctacagttgctgccactgctcccagggc 620

                                                                       
Query: 421 tgtggctccatacaagtatgcctccagtgtctgaagccctcaccctaccattcatctgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtggctccatacaagtatgcctccagtgtctgaagccctcaccctaccattcatctgct 680

                                                                       
Query: 481 gcaggacacctagtctgcagtccatgcccagggtcagaagcacatgattgcctccatgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaggacacctagtctgcagtccatgcccagggtcagaagcacatgattgcctccatgct 740

                          
Query: 541 ggctgcagcgcccct 555
           |||||||||||||||
Sbjct: 741 ggctgcagcgcccct 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)