BAC Information

Click to search

BAC

Clone NameMSMg01-536D10
Chromosome16 (Build37)
Map Location 95,589,481 - 95,589,594
singlet/doubletsinglet
Overlap geneErg
Upstream genePigp, Ttc3, Dscr3, Dyrk1a, Kcnj6, LOC666201, Kcnj15
Downstream geneEts2, LOC625548, LOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr, B3galt5, Jam4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536D10.T7 (MSMg01no536_d10.b1)MSMg01-536D10.TJ (MSMg01no536_d10.g1)
ACCAG603481AG603482
length783761
length of high quality
(start - end)
115 (187 - 301)---
definitionCHROMAT_FILE: MSMg01no536_d10.b1 PHD_FILE: MSMg01no536_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:15 2005CHROMAT_FILE: MSMg01no536_d10.g1 PHD_FILE: MSMg01no536_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTAGTCTGACCCAGCTGTCCAGTGAGCCCGGAGGACCCAGT
TGTCTCTGCCTCATGACATGCTGGTGCTTGGCTTTTTAAAATCTAGGTTT
TGAAGATCAGATTCTTACATCTCATACTTTTCCAGTCAACTGTGAATATG
GGCCTCTTTGATGGGGCTAGTCTGTTTTGATCACCTCTGAAATACTTGTC
TCTAAAACAAGGATTCCTAGGAGCTACTGGAGATTCAGCTTTCAATGTAT
GAGTTTTAGGGGACAGGACCCAACCTACTACCAAGGAGATTCAATAACTG
GTGTTTTAAAGAGATAATCTAATGACCGTCAGAGTCCAGTTGTGGACTGC
AGGAGGATGTCTCTGAGTCAGATGCTAGTAGAAAACAGGCTCTTCGTACA
TACCTGACCAATACTCTTCACCTGTCCTCTGAAGTCAGTGTGAGCCAGCT
AGCTTGCTCTGGGTGTTAGTTTTCAGATCACAAGCAGCTGTGCTACACTG
GCATGAATCCCATGGTGGCGTGGCGTCTGCGTCATATTCTCAGCTGTAAA
TTTGATGCCNAGATGTCACGGCCACACCGTAAGAACACGCTGGAATTTCT
GTCTCTGAAACCCCCAGCCAATCTAGGTTTGGGATGAAGAACTCTTCAGA
TGCTCTCATCGTGGGCGTTCCCACCAGAGATCCACACTCTGACAATGTGA
AAAACCGCCATTGTTGACATTCGATCCTGCCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTGATCTCAATTAGCCCACCATTGCATTTGAAGGTGACTAGAC
TTACGGATACGTCCCTGTAATGGGTAGCCCAGAATGCACAGTATGAGAGA
AGAAGCTGATAGACAGCGAAGTGACCTGCTTTGTCTGAGATTATCTATGG
CTAATGTGGGAAGACTGTTCCCCATAATGGAAACTGCGCACTGTCCTTAA
TGGGCTGTTTGGGGGTCTGAACATCAGACTGGACACATTTCCTTAGCATG
GGAATTTCCTGTGAGAAAAGTCTCCCCACGGAACCTTACCGAAGATGGGC
GCTTTATGTCATTTGCGACTATGTCAGATGTGTTGGCTCTCTTACACACT
GATAAAGCCTCTTTTGAGATGCCAGGTGCACCCTACATGTGAATTACCAG
GGACATTTATCCCCACTCCCGCTCAGTCCTGTGAGATTAGGCAATCTTTG
TGTGCCACCTACGTATTTACAAAGAATTTGGAGCTGAGTTTACGTTCCTT
GACATCTTGAGACTCCTAGATCTACAAGATAATTCAACCCCTGCTGGGGT
TGGGCATATGTATGATATGTGTGTGTGGGTGACTTTTGGGGGTGGGTTCT
CCTGAGAAAGACCTATGTGTTAGCCTGTTCCTAATGTACAGCTAATATCT
TCCATGTGCTGAATGCCAACCTTGGCCGGGTTTCTCCGCCTGCCCGGGAC
TTTCTTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_d10.b1 MSMg01no536_d10.b1 CHROMAT_FILE:
MSMg01no536_d10.b1 PHD_FILE: MSMg01no536_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:15 2005
         (115 letters)



>mm_chr16_95589281_95589794
          Length = 514

 Score =  192 bits (99), Expect = 8e-54
 Identities = 111/115 (96%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caactgtgaatatgggcctctttgatggggctagtctgttttgatcacctctgaaatact 60
           |||||| |||||||||||||||||||||  ||||||||||||| ||||||||||||||||
Sbjct: 314 caactg-gaatatgggcctctttgatggaactagtctgttttggtcacctctgaaatact 256

                                                                  
Query: 61  tgtctctaaaacaaggattcctaggagctactggagattcagctttcaatgtatg 115
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgtctctaaaacaaggattcctaggagctactggagattcagctttcaatgtatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 514
Length adjustment: 8
Effective length of query: 107
Effective length of database: 506
Effective search space:    54142
Effective search space used:    54142
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)